curatedBreastData 1.2.0
Katie Planey
| Snapshot Date: 2015-10-24 12:50:03 -0400 (Sat, 24 Oct 2015) | | URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_2/experiment/pkgs/curatedBreastData | | Last Changed Rev: 3460 / Revision: 3473 | | Last Changed Date: 2015-10-13 16:14:23 -0400 (Tue, 13 Oct 2015) |
| linux1.bioconductor.org | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | OK | OK | |  |
| windows1.bioconductor.org | Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | [ OK ] | OK | |
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### Running command:
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### rm -rf curatedBreastData.buildbin-libdir curatedBreastData.Rcheck && mkdir curatedBreastData.buildbin-libdir curatedBreastData.Rcheck && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=curatedBreastData.buildbin-libdir curatedBreastData_1.2.0.tar.gz >curatedBreastData.Rcheck\00install.out 2>&1 && cp curatedBreastData.Rcheck\00install.out curatedBreastData-install.out && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=curatedBreastData.buildbin-libdir --install="check:curatedBreastData-install.out" --force-multiarch --no-vignettes --timings curatedBreastData_1.2.0.tar.gz
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* using log directory 'C:/biocbld/bbs-3.2-data-experiment/meat/curatedBreastData.Rcheck'
* using R version 3.2.2 Patched (2015-08-16 r69094)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'curatedBreastData/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'curatedBreastData' version '1.2.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'curatedBreastData' can be installed ... OK
* checking installed package size ... NOTE
installed size is 283.0Mb
sub-directories of 1Mb or more:
data 282.6Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [246s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
collapseDupProbes 69.21 0.87 71.41
processExpressionSet 37.43 0.92 38.37
filterAndImputeSamples 36.36 1.33 38.03
filterGenesByVariance 32.22 0.50 32.74
curatedBreastDataExprSetList 31.39 0.64 32.03
removeDuplicatedPatients 31.74 0.28 32.05
** running examples for arch 'x64' ... [229s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
collapseDupProbes 71.67 0.72 72.48
processExpressionSet 33.74 0.99 34.75
filterAndImputeSamples 33.48 1.17 34.65
filterGenesByVariance 28.50 0.56 29.08
curatedBreastDataExprSetList 27.77 0.59 28.38
removeDuplicatedPatients 27.74 0.44 28.19
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
'C:/biocbld/bbs-3.2-data-experiment/meat/curatedBreastData.Rcheck/00check.log'
for details.
install for i386
* installing *source* package 'curatedBreastData' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'curatedBreastData' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'curatedBreastData' as curatedBreastData_1.2.0.zip
* DONE (curatedBreastData)