| Back to Build/check report for BioC 3.18 experimental data |
|
This page was generated on 2024-04-16 14:51:28 -0400 (Tue, 16 Apr 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.3.3 (2024-02-29) -- "Angel Food Cake" | 4676 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 118/429 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
| ewceData 1.10.0 (landing page) Alan Murphy
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | ||||||||
|
To the developers/maintainers of the ewceData package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: ewceData |
| Version: 1.10.0 |
| Command: /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD check --install=check:ewceData.install-out.txt --library=/home/biocbuild/bbs-3.18-bioc/R/site-library --timings ewceData_1.10.0.tar.gz |
| StartedAt: 2024-04-16 11:27:25 -0400 (Tue, 16 Apr 2024) |
| EndedAt: 2024-04-16 11:30:49 -0400 (Tue, 16 Apr 2024) |
| EllapsedTime: 204.6 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: ewceData.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD check --install=check:ewceData.install-out.txt --library=/home/biocbuild/bbs-3.18-bioc/R/site-library --timings ewceData_1.10.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.18-data-experiment/meat/ewceData.Rcheck’
* using R version 4.3.3 (2024-02-29)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
* running under: Ubuntu 22.04.4 LTS
* using session charset: UTF-8
* checking for file ‘ewceData/DESCRIPTION’ ... OK
* this is package ‘ewceData’ version ‘1.10.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ewceData’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
‘ewceData.Rmd’ using ‘UTF-8’... OK
OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: OK
ewceData.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD INSTALL ewceData ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.18-bioc/R/site-library’ * installing *source* package ‘ewceData’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ewceData)
ewceData.Rcheck/ewceData-Ex.timings
| name | user | system | elapsed | |
| all_hgnc | 1.578 | 0.128 | 2.100 | |
| all_hgnc_wtEnsembl | 1.011 | 0.072 | 1.160 | |
| all_mgi | 0.884 | 0.064 | 1.027 | |
| all_mgi_wtEnsembl | 0.958 | 0.084 | 1.123 | |
| alzh_gwas_top100 | 0 | 0 | 0 | |
| cortex_mrna | 2.941 | 0.388 | 3.408 | |
| ctd | 3.286 | 0.120 | 3.483 | |
| ensembl_transcript_lengths_GCcontent | 1.094 | 0.072 | 1.941 | |
| ewceData-Package | 0.792 | 0.036 | 0.931 | |
| example_genelist | 1.182 | 0.148 | 1.426 | |
| hpsd_genes | 0.711 | 0.029 | 0.846 | |
| hypothalamus_mrna | 1.112 | 0.067 | 1.267 | |
| id_genes | 0.773 | 0.052 | 0.916 | |
| mgi_synonym_data | 1.201 | 0.032 | 1.312 | |
| mouse_to_human_homologs | 0.783 | 0.020 | 0.885 | |
| rbfox_genes | 0.827 | 0.044 | 0.947 | |
| schiz_genes | 0.810 | 0.056 | 0.943 | |
| tt_alzh | 1.149 | 0.164 | 1.390 | |
| tt_alzh_BA36 | 0.840 | 0.024 | 0.942 | |
| tt_alzh_BA44 | 0.840 | 0.044 | 0.962 | |