| Back to Build/check report for BioC 3.18 experimental data | 
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This page was generated on 2024-04-16 14:51:28 -0400 (Tue, 16 Apr 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs | 
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.3.3 (2024-02-29) -- "Angel Food Cake" | 4676 | 
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 106/429 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
| DvDdata 1.38.0  (landing page) J. Saez-Rodriguez 
 | nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | WARNINGS |  | |||||||
| To the developers/maintainers of the DvDdata package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. | 
| Package: DvDdata | 
| Version: 1.38.0 | 
| Command: /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD check --install=check:DvDdata.install-out.txt --library=/home/biocbuild/bbs-3.18-bioc/R/site-library --timings DvDdata_1.38.0.tar.gz | 
| StartedAt: 2024-04-16 11:24:02 -0400 (Tue, 16 Apr 2024) | 
| EndedAt: 2024-04-16 11:24:17 -0400 (Tue, 16 Apr 2024) | 
| EllapsedTime: 15.3 seconds | 
| RetCode: 0 | 
| Status: WARNINGS | 
| CheckDir: DvDdata.Rcheck | 
| Warnings: 1 | 
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### Running command:
###
###   /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD check --install=check:DvDdata.install-out.txt --library=/home/biocbuild/bbs-3.18-bioc/R/site-library --timings DvDdata_1.38.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.18-data-experiment/meat/DvDdata.Rcheck’
* using R version 4.3.3 (2024-02-29)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
    gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
    GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
* running under: Ubuntu 22.04.4 LTS
* using session charset: UTF-8
* checking for file ‘DvDdata/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘DvDdata’ version ‘1.38.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘DvDdata’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 44.0Mb
  sub-directories of 1Mb or more:
    data  43.9Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking Rd files ... NOTE
prepare_Rd: DvDdata-package.Rd:35-37: Dropping empty section \seealso
prepare_Rd: GEOfactorvalues.Rd:18-20: Dropping empty section \references
prepare_Rd: annotationlist.Rd:17-18: Dropping empty section \source
prepare_Rd: druglabels.Rd:11-13: Dropping empty section \details
prepare_Rd: genelist.Rd:14-16: Dropping empty section \source
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... WARNING
  LazyData DB of 43.9 MB without LazyDataCompression set
  See §1.1.6 of 'Writing R Extensions'
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘DvDdata.Rnw’ using ‘UTF-8’... OK
 OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.18-data-experiment/meat/DvDdata.Rcheck/00check.log’
for details.
DvDdata.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD INSTALL DvDdata ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.18-bioc/R/site-library’ * installing *source* package ‘DvDdata’ ... ** using staged installation ** data *** moving datasets to lazyload DB ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DvDdata)
DvDdata.Rcheck/DvDdata-Ex.timings
| name | user | system | elapsed | |
| DvDdata-package | 0.012 | 0.000 | 0.013 | |
| GEOfactorvalues | 0.001 | 0.000 | 0.001 | |
| annotationlist | 0.001 | 0.000 | 0.001 | |
| cytodisease | 0.000 | 0.000 | 0.001 | |
| cytodrug | 0.001 | 0.000 | 0.001 | |
| diseaseClusters | 0.001 | 0.000 | 0.001 | |
| diseaseRL | 0.001 | 0.000 | 0.001 | |
| diseaselabels | 0.001 | 0.000 | 0.000 | |
| drugClusters | 0.001 | 0.000 | 0.000 | |
| drugRL | 0.001 | 0.000 | 0.000 | |
| druglabels | 0.001 | 0.000 | 0.000 | |
| genelist | 0.001 | 0.000 | 0.000 | |