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This page was generated on 2023-10-12 14:51:36 -0400 (Thu, 12 Oct 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.2 LTS)x86_644.3.1 (2023-06-16) -- "Beagle Scouts" 4626
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 315/421HostnameOS / ArchINSTALLBUILDCHECK
RforProteomics 1.38.1  (landing page)
Laurent Gatto
Snapshot Date: 2023-10-12 07:30:02 -0400 (Thu, 12 Oct 2023)
git_url: https://git.bioconductor.org/packages/RforProteomics
git_branch: RELEASE_3_17
git_last_commit: ea2f63a
git_last_commit_date: 2023-05-12 02:03:53 -0400 (Fri, 12 May 2023)
nebbiolo1Linux (Ubuntu 22.04.2 LTS) / x86_64  OK    ERROR  skipped

BUILD results for RforProteomics on nebbiolo1


To the developers/maintainers of the RforProteomics package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: RforProteomics
Version: 1.38.1
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data RforProteomics
StartedAt: 2023-10-12 10:46:41 -0400 (Thu, 12 Oct 2023)
EndedAt: 2023-10-12 10:47:44 -0400 (Thu, 12 Oct 2023)
EllapsedTime: 62.8 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data RforProteomics
###
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* checking for file ‘RforProteomics/DESCRIPTION’ ... OK
* preparing ‘RforProteomics’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘RProtVis.Rmd’ using rmarkdown

Quitting from lines 172-202 [makemadata] (RProtVis.Rmd)
Error: processing vignette 'RProtVis.Rmd' failed with diagnostics:
No files to download.
--- failed re-building ‘RProtVis.Rmd’

--- re-building ‘RforProteomics.Rmd’ using rmarkdown
starting worker pid=2938695 on localhost:11277 at 10:47:40.459
starting worker pid=2938694 on localhost:11277 at 10:47:40.461
Loading required package: mzID
Loading required package: mzID
loaded mzID and set parent environment
loaded mzID and set parent environment
reading 55merge_omssa.mzid...
reading 55merge_tandem.mzid...
55merge_omssa.mzid DONE!
55merge_tandem.mzid DONE!

Quitting from lines 384-392 [downloadmztab] (RforProteomics.Rmd)
Error: processing vignette 'RforProteomics.Rmd' failed with diagnostics:
No files to download.
--- failed re-building ‘RforProteomics.Rmd’

SUMMARY: processing the following files failed:
  ‘RProtVis.Rmd’ ‘RforProteomics.Rmd’

Error: Vignette re-building failed.
Execution halted