| Back to Build/check report for BioC 3.17 experimental data |
|
This page was generated on 2023-10-12 14:51:35 -0400 (Thu, 12 Oct 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4626 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 146/421 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
| GenomicDistributionsData 1.8.0 (landing page) Kristyna Kupkova
| nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) / x86_64 | OK | OK | OK | ||||||||
|
To the developers/maintainers of the GenomicDistributionsData package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: GenomicDistributionsData |
| Version: 1.8.0 |
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:GenomicDistributionsData.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings GenomicDistributionsData_1.8.0.tar.gz |
| StartedAt: 2023-10-12 11:25:39 -0400 (Thu, 12 Oct 2023) |
| EndedAt: 2023-10-12 11:30:57 -0400 (Thu, 12 Oct 2023) |
| EllapsedTime: 318.0 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: GenomicDistributionsData.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:GenomicDistributionsData.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings GenomicDistributionsData_1.8.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.17-data-experiment/meat/GenomicDistributionsData.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
gcc (Ubuntu 11.3.0-1ubuntu1~22.04.1) 11.3.0
GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04.1) 11.3.0
* running under: Ubuntu 22.04.3 LTS
* using session charset: UTF-8
* checking for file ‘GenomicDistributionsData/DESCRIPTION’ ... OK
* this is package ‘GenomicDistributionsData’ version ‘1.8.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
.travis.yml
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘GenomicDistributionsData’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
‘intro.Rmd’ using ‘UTF-8’... OK
NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/home/biocbuild/bbs-3.17-data-experiment/meat/GenomicDistributionsData.Rcheck/00check.log’
for details.
GenomicDistributionsData.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL GenomicDistributionsData ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/site-library’ * installing *source* package ‘GenomicDistributionsData’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GenomicDistributionsData)
GenomicDistributionsData.Rcheck/GenomicDistributionsData-Ex.timings
| name | user | system | elapsed | |
| GenomicDistributionsData | 0.000 | 0.000 | 0.001 | |
| TSS_hg19 | 1.104 | 0.072 | 1.312 | |
| TSS_hg38 | 1.062 | 0.132 | 1.279 | |
| TSS_mm10 | 0.948 | 0.100 | 1.139 | |
| TSS_mm9 | 0.937 | 0.076 | 1.098 | |
| buildChromSizes | 0.000 | 0.000 | 0.001 | |
| buildGeneModels | 0 | 0 | 0 | |
| buildOpenSignalMatrix | 0 | 0 | 0 | |
| buildTSS | 0 | 0 | 0 | |
| chromSizes_hg19 | 0.773 | 0.080 | 0.951 | |
| chromSizes_hg38 | 0.752 | 0.059 | 0.897 | |
| chromSizes_mm10 | 0.704 | 0.072 | 0.862 | |
| chromSizes_mm9 | 0.801 | 0.076 | 0.979 | |
| geneModels_hg19 | 1.056 | 0.115 | 1.293 | |
| geneModels_hg38 | 0.935 | 0.096 | 1.114 | |
| geneModels_mm10 | 1.036 | 0.053 | 1.173 | |
| geneModels_mm9 | 1.198 | 0.064 | 1.351 | |
| loadBSgenome | 0 | 0 | 0 | |
| loadEnsDb | 0.000 | 0.000 | 0.001 | |
| loadTxDb | 0 | 0 | 0 | |
| openSignalMatrix_hg19 | 0 | 0 | 0 | |
| openSignalMatrix_hg38 | 0.001 | 0.000 | 0.000 | |
| openSignalMatrix_mm10 | 0 | 0 | 0 | |