| Back to Build/check report for BioC 3.16 experimental data |
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This page was generated on 2023-04-11 14:50:27 -0400 (Tue, 11 Apr 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4502 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the xcoredata package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 409/416 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
| xcoredata 1.2.0 (landing page) Maciej Migdał
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | ||||||||
| Package: xcoredata |
| Version: 1.2.0 |
| Command: /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:xcoredata.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/site-library --timings xcoredata_1.2.0.tar.gz |
| StartedAt: 2023-04-11 12:28:11 -0400 (Tue, 11 Apr 2023) |
| EndedAt: 2023-04-11 12:32:37 -0400 (Tue, 11 Apr 2023) |
| EllapsedTime: 265.8 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: xcoredata.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:xcoredata.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/site-library --timings xcoredata_1.2.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.16-data-experiment/meat/xcoredata.Rcheck’
* using R version 4.2.3 (2023-03-15)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* checking for file ‘xcoredata/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘xcoredata’ version ‘1.2.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘xcoredata’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
chip_atlas_promoters_f5 29.019 1.156 30.266
remap_promoters_f5 25.906 0.876 26.876
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
‘xcoredata.Rmd’ using ‘UTF-8’... OK
NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: OK
xcoredata.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD INSTALL xcoredata ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.16-bioc/R/site-library’ * installing *source* package ‘xcoredata’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location snapshotDate(): 2022-10-31 ** testing if installed package can be loaded from final location snapshotDate(): 2022-10-31 ** testing if installed package keeps a record of temporary installation path * DONE (xcoredata)
xcoredata.Rcheck/xcoredata-Ex.timings
| name | user | system | elapsed | |
| chip_atlas_meta | 1.557 | 0.220 | 1.954 | |
| chip_atlas_promoters_f5 | 29.019 | 1.156 | 30.266 | |
| entrez2fantom | 0.714 | 0.072 | 0.931 | |
| promoters_f5 | 2.018 | 0.112 | 2.218 | |
| promoters_f5_core | 0.810 | 0.008 | 0.907 | |
| remap_meta | 0.720 | 0.040 | 0.849 | |
| remap_promoters_f5 | 25.906 | 0.876 | 26.876 | |
| symbol2fantom | 0.805 | 0.220 | 1.186 | |