| Back to Build/check report for BioC 3.16 experimental data |
|
This page was generated on 2023-04-11 14:50:27 -0400 (Tue, 11 Apr 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4502 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the tweeDEseqCountData package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 401/416 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
| tweeDEseqCountData 1.36.0 (landing page) Juan R Gonzalez
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | ||||||||
| Package: tweeDEseqCountData |
| Version: 1.36.0 |
| Command: /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:tweeDEseqCountData.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/site-library --timings tweeDEseqCountData_1.36.0.tar.gz |
| StartedAt: 2023-04-11 12:26:57 -0400 (Tue, 11 Apr 2023) |
| EndedAt: 2023-04-11 12:27:23 -0400 (Tue, 11 Apr 2023) |
| EllapsedTime: 26.4 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: tweeDEseqCountData.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:tweeDEseqCountData.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/site-library --timings tweeDEseqCountData_1.36.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.16-data-experiment/meat/tweeDEseqCountData.Rcheck’
* using R version 4.2.3 (2023-03-15)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* checking for file ‘tweeDEseqCountData/DESCRIPTION’ ... OK
* this is package ‘tweeDEseqCountData’ version ‘1.36.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘tweeDEseqCountData’ can be installed ... OK
* checking installed package size ... NOTE
installed size is 41.3Mb
sub-directories of 1Mb or more:
data 41.2Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Package in Depends field not imported from: ‘Biobase’
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
NB: .First.lib is obsolete and will not be used in R >= 3.0.0
.First.lib: no visible global function definition for ‘.path.package’
Undefined global functions or variables:
.path.package
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE
Status: 3 NOTEs
See
‘/home/biocbuild/bbs-3.16-data-experiment/meat/tweeDEseqCountData.Rcheck/00check.log’
for details.
tweeDEseqCountData.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD INSTALL tweeDEseqCountData ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.16-bioc/R/site-library’ * installing *source* package ‘tweeDEseqCountData’ ... ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tweeDEseqCountData)
tweeDEseqCountData.Rcheck/tweeDEseqCountData-Ex.timings
| name | user | system | elapsed | |
| annotEnsembl63 | 0.284 | 0.016 | 0.300 | |
| cheung | 0.168 | 0.012 | 0.180 | |
| commonPickrell1Huang | 0.609 | 0.028 | 0.637 | |
| genderGenes | 0.000 | 0.001 | 0.001 | |
| hkGenes | 0.000 | 0.001 | 0.002 | |
| montgomery | 0.169 | 0.012 | 0.181 | |
| pickrell | 0.272 | 0.048 | 0.320 | |