| Back to Build/check report for BioC 3.16 experimental data |
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This page was generated on 2023-04-11 14:50:27 -0400 (Tue, 11 Apr 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4502 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the grndata package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 148/416 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
| grndata 1.30.0 (landing page) Pau Bellot
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | WARNINGS | ||||||||
| Package: grndata |
| Version: 1.30.0 |
| Command: /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:grndata.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/site-library --timings grndata_1.30.0.tar.gz |
| StartedAt: 2023-04-11 11:49:14 -0400 (Tue, 11 Apr 2023) |
| EndedAt: 2023-04-11 11:49:35 -0400 (Tue, 11 Apr 2023) |
| EllapsedTime: 21.0 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: grndata.Rcheck |
| Warnings: 1 |
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### Running command:
###
### /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:grndata.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/site-library --timings grndata_1.30.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.16-data-experiment/meat/grndata.Rcheck’
* using R version 4.2.3 (2023-03-15)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* checking for file ‘grndata/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘grndata’ version ‘1.30.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘grndata’ can be installed ... OK
* checking installed package size ... NOTE
installed size is 54.4Mb
sub-directories of 1Mb or more:
data 54.2Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... WARNING
LazyData DB of 54.2 MB without LazyDataCompression set
See §1.1.6 of 'Writing R Extensions'
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘runTests.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
‘grndata.Rmd’ using ‘UTF-8’... OK
NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 2 NOTEs
See
‘/home/biocbuild/bbs-3.16-data-experiment/meat/grndata.Rcheck/00check.log’
for details.
grndata.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD INSTALL grndata ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.16-bioc/R/site-library’ * installing *source* package ‘grndata’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (grndata)
grndata.Rcheck/tests/runTests.Rout
R version 4.2.3 (2023-03-15) -- "Shortstop Beagle"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage("grndata")
RUNIT TEST PROTOCOL -- Tue Apr 11 11:49:31 2023
***********************************************
Number of test functions: 1
Number of errors: 0
Number of failures: 0
1 Test Suite :
grndata RUnit Tests - 1 test function, 0 errors, 0 failures
Number of test functions: 1
Number of errors: 0
Number of failures: 0
>
> proc.time()
user system elapsed
1.098 0.234 1.313
grndata.Rcheck/grndata-Ex.timings
| name | user | system | elapsed | |
| Availabledata | 0.010 | 0.000 | 0.009 | |
| getData | 0.093 | 0.016 | 0.109 | |
| gnw1565.data | 0.176 | 0.012 | 0.188 | |
| gnw1565.net | 0.096 | 0.020 | 0.116 | |
| gnw2000.data | 0.223 | 0.048 | 0.270 | |
| gnw2000.net | 0.146 | 0.024 | 0.170 | |
| rogers1000.data | 0.042 | 0.008 | 0.050 | |
| rogers1000.net | 0.027 | 0.008 | 0.035 | |
| syntren1000.data | 0.052 | 0.004 | 0.057 | |
| syntren1000.net | 0.024 | 0.000 | 0.024 | |
| syntren300.data | 0.012 | 0.000 | 0.012 | |
| syntren300.net | 0.003 | 0.000 | 0.002 | |
| toy.data | 0.001 | 0.000 | 0.001 | |
| toy.net | 0.000 | 0.000 | 0.001 | |