| Back to Build/check report for BioC 3.16 experimental data |
|
This page was generated on 2023-04-11 14:50:27 -0400 (Tue, 11 Apr 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4502 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the MUGAExampleData package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 253/416 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
| MUGAExampleData 1.18.0 (landing page) Daniel Gatti
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | ||||||||
| Package: MUGAExampleData |
| Version: 1.18.0 |
| Command: /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:MUGAExampleData.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/site-library --timings MUGAExampleData_1.18.0.tar.gz |
| StartedAt: 2023-04-11 12:04:48 -0400 (Tue, 11 Apr 2023) |
| EndedAt: 2023-04-11 12:05:20 -0400 (Tue, 11 Apr 2023) |
| EllapsedTime: 32.1 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: MUGAExampleData.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:MUGAExampleData.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/site-library --timings MUGAExampleData_1.18.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.16-data-experiment/meat/MUGAExampleData.Rcheck’
* using R version 4.2.3 (2023-03-15)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* checking for file ‘MUGAExampleData/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘MUGAExampleData’ version ‘1.18.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘MUGAExampleData’ can be installed ... OK
* checking installed package size ... NOTE
installed size is 88.6Mb
sub-directories of 1Mb or more:
data 88.5Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Title field: should not end in a period.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
‘MUGAExampleData.Rnw’... OK
OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/home/biocbuild/bbs-3.16-data-experiment/meat/MUGAExampleData.Rcheck/00check.log’
for details.
MUGAExampleData.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD INSTALL MUGAExampleData ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.16-bioc/R/site-library’ * installing *source* package ‘MUGAExampleData’ ... ** using staged installation ** data ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MUGAExampleData)
MUGAExampleData.Rcheck/MUGAExampleData-Ex.timings
| name | user | system | elapsed | |
| FinalReport1 | 1.817 | 0.096 | 1.912 | |
| FinalReport2 | 1.023 | 0.052 | 1.075 | |
| MUGAExampleData-package | 1.952 | 0.027 | 1.980 | |
| Samples1 | 0.000 | 0.000 | 0.001 | |
| Samples2 | 0.000 | 0.000 | 0.001 | |
| call.rate.batch | 0.000 | 0.000 | 0.001 | |
| geno | 0.389 | 0.000 | 0.390 | |
| model.probs | 0.605 | 0.031 | 0.637 | |
| pheno | 0.004 | 0.000 | 0.004 | |
| x | 0.060 | 0.003 | 0.064 | |
| y | 0.064 | 0.000 | 0.065 | |