| Back to Build/check report for BioC 3.16 experimental data |
|
This page was generated on 2023-04-11 14:50:27 -0400 (Tue, 11 Apr 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4502 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the GSBenchMark package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 149/416 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
| GSBenchMark 1.18.0 (landing page) Bahman Afsari
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | ||||||||
| Package: GSBenchMark |
| Version: 1.18.0 |
| Command: /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:GSBenchMark.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/site-library --timings GSBenchMark_1.18.0.tar.gz |
| StartedAt: 2023-04-11 11:49:15 -0400 (Tue, 11 Apr 2023) |
| EndedAt: 2023-04-11 11:49:45 -0400 (Tue, 11 Apr 2023) |
| EllapsedTime: 30.3 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: GSBenchMark.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:GSBenchMark.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/site-library --timings GSBenchMark_1.18.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.16-data-experiment/meat/GSBenchMark.Rcheck’
* using R version 4.2.3 (2023-03-15)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* checking for file ‘GSBenchMark/DESCRIPTION’ ... OK
* this is package ‘GSBenchMark’ version ‘1.18.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘GSBenchMark’ can be installed ... OK
* checking installed package size ... NOTE
installed size is 41.9Mb
sub-directories of 1Mb or more:
data 41.8Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
‘GSBenchMark.Rnw’... OK
OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/home/biocbuild/bbs-3.16-data-experiment/meat/GSBenchMark.Rcheck/00check.log’
for details.
GSBenchMark.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD INSTALL GSBenchMark ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.16-bioc/R/site-library’ * installing *source* package ‘GSBenchMark’ ... ** using staged installation ** data ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GSBenchMark)
GSBenchMark.Rcheck/GSBenchMark-Ex.timings
| name | user | system | elapsed | |
| GSBenchMarkDatasets | 0.157 | 0.008 | 0.166 | |
| bipolar_GDS2190 | 0.152 | 0.004 | 0.157 | |
| breast_GDS807 | 0.154 | 0.000 | 0.154 | |
| diracpathways | 0.006 | 0.000 | 0.006 | |
| exprsdata | 0.222 | 0.020 | 0.242 | |
| leukemia_GSEA | 0.142 | 0.012 | 0.154 | |
| logexprsdata | 0.231 | 0.020 | 0.250 | |
| marfan_GDS2960 | 0.085 | 0.000 | 0.085 | |
| melanoma_GDS2735 | 0.201 | 0.012 | 0.213 | |
| parkinsons_GDS2519 | 0.370 | 0.008 | 0.378 | |
| phenotypes | 0.249 | 0.008 | 0.257 | |
| prostate_GDS2545_m_nf | 0.151 | 0.004 | 0.155 | |
| prostate_GDS2545_m_p | 0.325 | 0.004 | 0.330 | |
| prostate_GDS2545_p_nf | 0.255 | 0.012 | 0.267 | |
| sarcoma_data | 0.448 | 0.036 | 0.484 | |
| squamous_GDS2520 | 0.160 | 0.004 | 0.164 | |