| Back to Build/check report for BioC 3.15 experimental data |
|
This page was generated on 2022-02-17 08:36:53 -0500 (Thu, 17 Feb 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" | 1362 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the nullrangesData package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 258/406 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
| nullrangesData 1.1.0 (landing page) Michael Love
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | WARNINGS | ||||||||
| Package: nullrangesData |
| Version: 1.1.0 |
| Command: /home/biocbuild/bbs-3.15-data-experiment/R/bin/R CMD check --install=check:nullrangesData.install-out.txt --library=/home/biocbuild/bbs-3.15-data-experiment/R/library --no-vignettes --timings nullrangesData_1.1.0.tar.gz |
| StartedAt: 2022-02-17 07:42:33 -0500 (Thu, 17 Feb 2022) |
| EndedAt: 2022-02-17 07:46:51 -0500 (Thu, 17 Feb 2022) |
| EllapsedTime: 257.9 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: nullrangesData.Rcheck |
| Warnings: 1 |
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###
### Running command:
###
### /home/biocbuild/bbs-3.15-data-experiment/R/bin/R CMD check --install=check:nullrangesData.install-out.txt --library=/home/biocbuild/bbs-3.15-data-experiment/R/library --no-vignettes --timings nullrangesData_1.1.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.15-data-experiment/meat/nullrangesData.Rcheck’
* using R Under development (unstable) (2022-01-05 r81451)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘nullrangesData/DESCRIPTION’ ... OK
* this is package ‘nullrangesData’ version ‘1.1.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘nullrangesData’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... WARNING
Error: package or namespace load failed for ‘nullrangesData’:
.onLoad failed in loadNamespace() for 'nullrangesData', details:
call: readRDS(.db_index_file(x))
error: error reading from connection
Call sequence:
6: stop(msg, call. = FALSE, domain = NA)
5: value[[3L]](cond)
4: tryCatchOne(expr, names, parentenv, handlers[[1L]])
3: tryCatchList(expr, classes, parentenv, handlers)
2: tryCatch({
attr(package, "LibPath") <- which.lib.loc
ns <- loadNamespace(package, lib.loc)
env <- attachNamespace(ns, pos = pos, deps, exclude, include.only)
}, error = function(e) {
P <- if (!is.null(cc <- conditionCall(e)))
paste(" in", deparse(cc)[1L])
else ""
msg <- gettextf("package or namespace load failed for %s%s:\n %s",
sQuote(package), P, conditionMessage(e))
if (logical.return && !quietly)
message(paste("Error:", msg), domain = NA)
else stop(msg, call. = FALSE, domain = NA)
})
1: library(packa
Execution halted
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING
See
‘/home/biocbuild/bbs-3.15-data-experiment/meat/nullrangesData.Rcheck/00check.log’
for details.
nullrangesData.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.15-data-experiment/R/bin/R CMD INSTALL nullrangesData ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.15-data-experiment/R/library’ * installing *source* package ‘nullrangesData’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location snapshotDate(): 2022-02-15 ** testing if installed package can be loaded from final location snapshotDate(): 2022-02-15 ** testing if installed package keeps a record of temporary installation path * DONE (nullrangesData)
nullrangesData.Rcheck/nullrangesData-Ex.timings
| name | user | system | elapsed | |
| DHSA549Hg38 | 1.920 | 0.196 | 2.248 | |
| hg19_10kb_bins | 2.680 | 0.324 | 3.088 | |
| hg19_10kb_ctcfBoundBinPairs | 1.177 | 0.116 | 1.387 | |
| nullrangesData | 1.266 | 0.196 | 1.546 | |