| Back to Build/check report for BioC 3.13 experimental data | 
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This page was generated on 2021-10-16 15:58:41 -0400 (Sat, 16 Oct 2021).
| To the developers/maintainers of the MEDIPSData package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. | 
| Package 223/406 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
| MEDIPSData 1.28.0  (landing page) Lukas Chavez 
 | malbec2 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | WARNINGS |  | |||||||
| Package: MEDIPSData | 
| Version: 1.28.0 | 
| Command: /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:MEDIPSData.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings MEDIPSData_1.28.0.tar.gz | 
| StartedAt: 2021-10-16 13:30:20 -0400 (Sat, 16 Oct 2021) | 
| EndedAt: 2021-10-16 13:30:55 -0400 (Sat, 16 Oct 2021) | 
| EllapsedTime: 34.8 seconds | 
| RetCode: 0 | 
| Status: WARNINGS | 
| CheckDir: MEDIPSData.Rcheck | 
| Warnings: 1 | 
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### Running command:
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###   /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:MEDIPSData.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings MEDIPSData_1.28.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.13-data-experiment/meat/MEDIPSData.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘MEDIPSData/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘MEDIPSData’ version ‘1.28.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  .git_fetch_output.txt
  .git_merge_output.txt
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘MEDIPSData’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 173.9Mb
  sub-directories of 1Mb or more:
    data      30.1Mb
    extdata  143.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... WARNING
File ‘data/datalist’ contains malformed line(s):
  ‘’
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.13-data-experiment/meat/MEDIPSData.Rcheck/00check.log’
for details.
MEDIPSData.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD INSTALL MEDIPSData ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.13-bioc/R/library’ * installing *source* package ‘MEDIPSData’ ... ** using staged installation ** data ** inst ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MEDIPSData)
MEDIPSData.Rcheck/MEDIPSData-Ex.timings
| name | user | system | elapsed | |
| CS | 0 | 0 | 0 | |
| DE_Input | 0.001 | 0.000 | 0.000 | |
| DE_MeDIP | 0.001 | 0.000 | 0.000 | |
| NSCLC_dataset | 0 | 0 | 0 | |
| annotation | 0.001 | 0.000 | 0.000 | |
| hESCs_Input | 0 | 0 | 0 | |
| hESCs_MeDIP | 0 | 0 | 0 | |
| mart_gene | 0.000 | 0.000 | 0.001 | |
| resultTable | 0 | 0 | 0 | |
| samplesNSCLC | 0.000 | 0.000 | 0.001 | |
| tcga_luad_lusc_450kmeth | 0 | 0 | 0 | |