BioC experimental data: CHECK report for ChIPXpressData on petty

Package: ChIPXpressData

Version: 1.2.0

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch ChIPXpressData_1.2.0.tar.gz

StartedAt: 2014-10-04 08:59:48 -0700 (Sat, 04 Oct 2014)

EndedAt: 2014-10-04 09:11:35 -0700 (Sat, 04 Oct 2014)

EllapsedTime: 707.2 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: ChIPXpressData.Rcheck

Warnings: 1

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch ChIPXpressData_1.2.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-2.14-data-experiment/meat/ChIPXpressData.Rcheck’
* using R version 3.1.1 (2014-07-10)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘ChIPXpressData/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘ChIPXpressData’ version ‘1.2.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  .BBSoptions
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ChIPXpressData’ can be installed ... [23s/219s] OK
* checking installed package size ... NOTE
  installed size is 4306.8Mb
  sub-directories of 1Mb or more:
    extdata  4305.9Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
                  old_size new_size compress
  GPL1261mean.rda    215Kb    180Kb       xz
  GPL1261var.rda     216Kb    189Kb       xz
  GPL570mean.rda     198Kb    159Kb       xz
  GPL570var.rda      209Kb    181Kb       xz
* checking examples ... [3s/3s] OK
* checking PDF version of manual ... OK

WARNING: There was 1 warning.
NOTE: There were 2 notes.
See
  ‘/Users/biocbuild/bbs-2.14-data-experiment/meat/ChIPXpressData.Rcheck/00check.log’
for details.

* installing *source* package ‘ChIPXpressData’ ...
** data
** inst
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (ChIPXpressData)

name	user	system	elapsed
DB_GPL1261.bigmemory	0.267	0.077	0.408
DB_GPL570.bigmemory	0.697	0.165	1.089
GPL1261mean	0.072	0.290	0.472
GPL1261var	0.018	0.000	0.019
GPL570mean	0.025	0.000	0.026
GPL570var	0.017	0.000	0.018