| Back to the "Multiple platform build/check report" | A B C D E F G H [I] J K L M N O P Q R S T U V W X Y Z |
| Package 278/553 | Hostname | OS / Arch | BUILD | CHECK | BUILD BIN | ||||
| IdMappingAnalysis 1.0.1 Alex Lisovich
| lamb2 | Linux (openSUSE 11.4) / x86_64 | OK | [ OK ] | |||||
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK | |||||
| petty | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
| Package: IdMappingAnalysis |
| Version: 1.0.1 |
| Command: /home/biocbuild/bbs-2.10-bioc/R/bin/R CMD check --no-vignettes --timings IdMappingAnalysis_1.0.1.tar.gz |
| StartedAt: 2012-09-24 01:41:02 -0700 (Mon, 24 Sep 2012) |
| EndedAt: 2012-09-24 01:42:37 -0700 (Mon, 24 Sep 2012) |
| EllapsedTime: 94.2 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: IdMappingAnalysis.Rcheck |
| Warnings: 0 |
* using log directory ‘/loc/home/biocbuild/bbs-2.10-bioc/meat/IdMappingAnalysis.Rcheck’ * using R version 2.15.1 (2012-06-22) * using platform: x86_64-unknown-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘IdMappingAnalysis/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘IdMappingAnalysis’ version ‘1.0.1’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking whether package ‘IdMappingAnalysis’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from ‘inst/doc’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignettes ... SKIPPED * checking PDF version of manual ... OK
IdMappingAnalysis.Rcheck/00install.out:
* installing *source* package ‘IdMappingAnalysis’ ... ** R ** data ** moving datasets to lazyload DB ** demo ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ‘IdMappingAnalysis.Rnw’ using ‘latin-9’ ** testing if installed package can be loaded * DONE (IdMappingAnalysis)
IdMappingAnalysis.Rcheck/IdMappingAnalysis-Ex.timings:
| name | user | system | elapsed | |
| 000-LB-.IdMapBase | 0.588 | 0.032 | 0.624 | |
| Bootstrap | 7.784 | 0.028 | 7.884 | |
| Corr | 0.580 | 0.008 | 0.599 | |
| CorrData | 0.180 | 0.000 | 0.177 | |
| CsvList.merge.Misc | 0.000 | 0.000 | 0.002 | |
| IdMap | 0.004 | 0.000 | 0.004 | |
| IdMapBase | 0.000 | 0.000 | 0.001 | |
| IdMapCounts | 0.520 | 0.000 | 0.523 | |
| IdMapDiff | 0.616 | 0.000 | 0.613 | |
| IdMapDiffCounts | 0.448 | 0.000 | 0.450 | |
| JointIdMap | 0.072 | 0.000 | 0.073 | |
| JointUniquePairs | 0.872 | 0.000 | 0.873 | |
| Mixture | 0.332 | 0.000 | 0.331 | |
| UniquePairs | 0.004 | 0.000 | 0.002 | |
| aligned.IdMapBase | 0.008 | 0.000 | 0.006 | |
| as.IdMap.UniquePairs | 0.040 | 0.000 | 0.042 | |
| as.MultiSet.CorrData | 1.012 | 0.004 | 1.017 | |
| as.UniquePairs.IdMap | 0.028 | 0.000 | 0.029 | |
| as.data.frame.IdMapBase | 0.228 | 0.000 | 0.229 | |
| as.data.frame.JointIdMap | 0.076 | 0.000 | 0.077 | |
| as.list.IdMap | 0.024 | 0.000 | 0.025 | |
| boxplot.JointUniquePairs | 0.060 | 0.004 | 0.062 | |
| byColNames.Subset | 0.016 | 0.000 | 0.014 | |
| byColumn.Subset | 0.008 | 0.000 | 0.007 | |
| byRow.Subset | 0.016 | 0.000 | 0.015 | |
| byRowNames.Subset | 0.004 | 0.000 | 0.005 | |
| clust.Mixture | 0.004 | 0.000 | 0.000 | |
| copy.Display | 0 | 0 | 0 | |
| corr.boxplot.JointUniquePairs | 0.072 | 0.000 | 0.074 | |
| corr.plot.JointUniquePairs | 0.068 | 0.000 | 0.067 | |
| create.Display | 0 | 0 | 0 | |
| create.UniquePairs | 0.248 | 0.000 | 0.249 | |
| diffCounts.plot.JointIdMap | 0.616 | 0.000 | 0.619 | |
| dim.IdMapBase | 0.012 | 0.000 | 0.012 | |
| dimnames.IdMapBase | 0.024 | 0.000 | 0.023 | |
| do.glm.JointUniquePairs | 0.024 | 0.000 | 0.026 | |
| ecdf.plot.JointIdMap | 0.297 | 0.000 | 0.293 | |
| equals.UniquePairs | 0.040 | 0.000 | 0.042 | |
| fisherTransform.DataFilter | 0.000 | 0.004 | 0.000 | |
| fisherTransformInverse.DataFilter | 0 | 0 | 0 | |
| fisherTransformJacobean.DataFilter | 0 | 0 | 0 | |
| getBootstrap.JointUniquePairs | 8.104 | 0.032 | 8.139 | |
| getCompoundEvents.IdMapDiffCounts | 0.432 | 0.008 | 0.457 | |
| getCompoundGroups.IdMapDiffCounts | 0.484 | 0.004 | 0.511 | |
| getCorr.JointUniquePairs | 0.084 | 0.000 | 0.448 | |
| getCorrData.JointUniquePairs | 0.372 | 0.000 | 0.469 | |
| getCorrDataFrame.JointUniquePairs | 0.020 | 0.000 | 0.028 | |
| getCounts.IdMap | 0.028 | 0.000 | 0.028 | |
| getCounts.JointIdMap | 0.208 | 0.000 | 0.212 | |
| getData.Corr | 0.004 | 0.000 | 0.000 | |
| getData.Mixture | 0.000 | 0.000 | 0.001 | |
| getDiff.JointIdMap | 0.300 | 0.000 | 0.298 | |
| getExperimentSet.CorrData | 0.176 | 0.004 | 0.182 | |
| getIdMapList.JointIdMap | 0.220 | 0.004 | 0.239 | |
| getMapNames.JointIdMap | 0.072 | 0.000 | 0.077 | |
| getMapNames.JointUniquePairs | 0.004 | 0.000 | 0.001 | |
| getMatch.UniquePairs | 0.056 | 0.000 | 0.063 | |
| getMatchInfo.JointIdMap | 0.080 | 0.000 | 0.085 | |
| getMatchInfo.JointUniquePairs | 0.520 | 0.000 | 0.553 | |
| getMixture.JointUniquePairs | 0.220 | 0.000 | 0.232 | |
| getSampleNames.CorrData | 0.004 | 0.000 | 0.001 | |
| getStats.IdMapCounts | 0.224 | 0.004 | 0.230 | |
| getStats.Mixture | 0.000 | 0.000 | 0.002 | |
| getUnionIdMap.JointIdMap | 0.588 | 0.004 | 0.614 | |
| getUniquePairs.Corr | 0.004 | 0.000 | 0.004 | |
| getUniquePairs.CorrData | 0.004 | 0.000 | 0.004 | |
| getUniquePairs.JointUniquePairs | 0.004 | 0.000 | 0.004 | |
| interactive.corr.boxplot.JointUniquePairs | 0.084 | 0.000 | 0.086 | |
| interactive.corr.plot.JointUniquePairs | 0.060 | 0.004 | 0.067 | |
| interactive.mixture.boxplot.JointUniquePairs | 0.264 | 0.000 | 0.281 | |
| interactive.mixture.plot.JointUniquePairs | 0.388 | 0.008 | 0.407 | |
| interactive.plot.CorrData | 0.044 | 0.000 | 0.044 | |
| interactive.plot.JointUniquePairs | 0 | 0 | 0 | |
| interleave.Misc | 0 | 0 | 0 | |
| line.loess.Display | 0 | 0 | 0 | |
| line.unsorted.Display | 0 | 0 | 0 | |
| log10.DataFilter | 0.024 | 0.000 | 0.021 | |
| merge.IdMap | 0.808 | 0.016 | 0.841 | |
| minAvgCountConstraint.DataFilter | 0.192 | 0.000 | 0.194 | |
| minCountConstraint.DataFilter | 0.340 | 0.004 | 0.342 | |
| minCountGroupConstraint.DataFilter | 0.212 | 0.000 | 0.213 | |
| mixture.boxplot.JointUniquePairs | 0.264 | 0.000 | 0.265 | |
| mixture.plot.JointUniquePairs | 0.224 | 0.000 | 0.224 | |
| plot.Bootstrap | 0.080 | 0.000 | 0.078 | |
| plot.Corr | 0.068 | 0.000 | 0.069 | |
| plot.CorrData | 0.032 | 0.000 | 0.035 | |
| plot.IdMapCounts | 0.349 | 0.008 | 0.355 | |
| plot.IdMapDiffCounts | 0.704 | 0.008 | 0.717 | |
| plot.Mixture | 0.020 | 0.000 | 0.021 | |
| primaryIDs.IdMapBase | 0.004 | 0.000 | 0.002 | |
| primaryKey.CorrData | 0 | 0 | 0 | |
| primaryKey.IdMapBase | 0.004 | 0.000 | 0.002 | |
| primaryKey.Mixture | 0.000 | 0.000 | 0.001 | |
| progressMsg.Display | 0 | 0 | 0 | |
| removeNASeries.DataFilter | 0.228 | 0.000 | 0.227 | |
| secondaryKey.CorrData | 0 | 0 | 0 | |
| secondaryKey.IdMapBase | 0.000 | 0.000 | 0.002 | |
| secondaryKey.Mixture | 0.000 | 0.000 | 0.001 | |
| subsetCorr.JointUniquePairs | 0.016 | 0.000 | 0.018 | |
| subsetData.JointUniquePairs | 0.016 | 0.000 | 0.018 | |
| subsetGroups.JointUniquePairs | 0.828 | 0.000 | 0.828 | |
| summary.IdMapDiffCounts | 0.592 | 0.000 | 0.590 | |
| swapKeys.IdMap | 0.068 | 0.000 | 0.070 | |
| swapKeys.UniquePairs | 0.032 | 0.000 | 0.034 | |
| textBoundingBox.Display | 0 | 0 | 0 | |
| to.base.Misc | 0.000 | 0.000 | 0.001 | |
| to.binary.logical.Misc | 0.000 | 0.000 | 0.001 | |
| to.index.expr.Misc | 0 | 0 | 0 | |
| unique.UniquePairs | 0.076 | 0.004 | 0.082 | |
| words.Misc | 0 | 0 | 0 | |
| zoom.pars.Display | 0 | 0 | 0 | |