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ppiStats

1.2.0

Tony Chiang
Last Changed Date: 2007-04-24 11:21:48 -0700
Last Changed Rev: 24214
lamb1 Linux (SUSE 10.1) x86_64  ERROR skipped
wellington Linux (SUSE 9.2) i686  ERROR skipped
lemming Windows Server 2003 (32-bit) x64 [ ERROR ]skippedskipped
Package: ppiStats
Version: 1.2.0
Command: D:\biocbld\bbs-2.0-bioc\R\bin\R.exe CMD build ppiStats
RetCode: 1
Time: 21.5 seconds
Status: ERROR
PackageFile: None

Command output

* checking for file 'ppiStats/DESCRIPTION' ... OK
* preparing 'ppiStats':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
installing R.css in D:/biocbld/bbs-2.0-bioc/tmpdir/Rinst332854556


---------- Making package ppiStats ------------
  adding build stamp to DESCRIPTION
  installing R files
  installing inst files
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'ppiStats'
     Formats: text html latex example chm 
  assessSymmetry                    text    html    latex   example chm
  bpMatrix                          text    html    latex   example chm
  calcInOutDegStats                 text    html    latex   example chm
  estErrProbMethodOfMoments         text    html    latex   example chm
  genBPGraph                        text    html    latex   example chm
  idProteinErrorType                text    html    latex   example chm
  idProteinType                     text    html    latex   example chm
  nullDistDoublyTestedEdges         text    html    latex   example chm
  twPERM                            text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702



Compiling d:\biocbld\bbs-2.0-bioc\meat\ppiStats\chm\ppiStats.chm





Compile time: 0 minutes, 0 seconds

10	Topics

22	Local links

2	Internet links

1	Graphic





Created d:\biocbld\bbs-2.0-bioc\meat\ppiStats\chm\ppiStats.chm, 30,407 bytes

Compression decreased file by 6,949 bytes.

  adding MD5 sums

* DONE (ppiStats)
* creating vignettes ... ERROR
Loading required package: GO
Loading required package: GOstats
Loading required package: graph
Loading required package: annotate
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: RBGL
Loading required package: Category
Loading required package: KEGG
Loading required package: genefilter
Loading required package: survival
Loading required package: splines
Loading required package: Matrix
Loading required package: lattice
Loading required package: YEAST
Loading required package: ppiData
Loading required package: Rgraphviz
Loading required package: geneplotter
KernSmooth 2.22 installed
Copyright M. P. Wand 1997

Attaching package: 'Rgraphviz'


	The following object(s) are masked from package:annotate :

	 toFile 


Error: processing vignette 'supp.Rnw' failed with diagnostics:
 chunk 3 (label=createEDATable) 
Error in data.frame(VB = numVB, CB = numCB, TB = numTB, "VB/TB" = round(numVB/numTB,  : 
	arguments imply differing number of rows: 13, 12
In addition: Warning message:
longer object length
	is not a multiple of shorter object length in: numVB/numTB 
recover called non-interactively; frames dumped, use debugger() to view