PCpheno

This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see PCpheno.

Phenotypes and cellular organizational units


Bioconductor version: 3.9

Tools to integrate, annotate, and link phenotypes to cellular organizational units such as protein complexes and pathways.

Author: Nolwenn Le Meur and Robert Gentleman

Maintainer: Nolwenn Le Meur <nlemeur at gmail.com>

Citation (from within R, enter citation("PCpheno")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("PCpheno")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("PCpheno")
PCpheno Vignette PDF R Script
Reference Manual PDF

Details

biocViews GraphAndNetwork, Network, Proteomics, Software
Version 1.46.0
In Bioconductor since BioC 2.2 (R-2.7) (16 years)
License Artistic-2.0
Depends R (>= 2.10), Category, ScISI(>= 1.3.0), SLGI, ppiStats, ppiData, annotate(>= 1.17.4)
Imports AnnotationDbi, Biobase, Category, GO.db, graph, graphics, GSEABase, KEGG.db, methods, ScISI, stats, stats4
System Requirements
URL
See More
Suggests KEGG.db, GO.db, org.Sc.sgd.db
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package PCpheno_1.46.0.tar.gz
Windows Binary PCpheno_1.46.0.zip
Mac OS X 10.11 (El Capitan) PCpheno_1.46.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/PCpheno
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/PCpheno
Bioc Package Browser https://code.bioconductor.org/browse/PCpheno/
Package Short Url https://bioconductor.org/packages/PCpheno/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.9 Source Archive