libpappsomspp
Library for mass spectrometry
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pappso::FilterMorphoAntiSpike Class Reference

anti spike filter set to zero alone values inside the window More...

#include <filtermorpho.h>

Inheritance diagram for pappso::FilterMorphoAntiSpike:
pappso::FilterNameInterface pappso::FilterInterface

Public Member Functions

 FilterMorphoAntiSpike (std::size_t half_window_size)
 FilterMorphoAntiSpike (const QString &strBuildParams)
 FilterMorphoAntiSpike (const FilterMorphoAntiSpike &other)
virtual ~FilterMorphoAntiSpike ()
FilterMorphoAntiSpikeoperator= (const FilterMorphoAntiSpike &other)
Tracefilter (Trace &data_points) const override
std::size_t getHalfWindowSize () const
QString toString () const override
QString name () const override
Public Member Functions inherited from pappso::FilterNameInterface
virtual ~FilterNameInterface ()
Public Member Functions inherited from pappso::FilterInterface
virtual ~FilterInterface ()

Protected Member Functions

void buildFilterFromString (const QString &strBuildParams) override
 build this filter using a string

Private Attributes

std::size_t m_halfWindowSize = 0

Detailed Description

anti spike filter set to zero alone values inside the window

Definition at line 168 of file filtermorpho.h.

Constructor & Destructor Documentation

◆ FilterMorphoAntiSpike() [1/3]

FilterMorphoAntiSpike::FilterMorphoAntiSpike ( std::size_t half_window_size)

Definition at line 274 of file filtermorpho.cpp.

275 : m_halfWindowSize(half_window_size)
276{
277}

References m_halfWindowSize.

Referenced by FilterMorphoAntiSpike(), and operator=().

◆ FilterMorphoAntiSpike() [2/3]

pappso::FilterMorphoAntiSpike::FilterMorphoAntiSpike ( const QString & strBuildParams)
Parameters
strBuildParamsstring to build the filter "antiSpike|2"

Definition at line 284 of file filtermorpho.cpp.

285{
286 buildFilterFromString(strBuildParams);
287}
void buildFilterFromString(const QString &strBuildParams) override
build this filter using a string

References buildFilterFromString().

◆ FilterMorphoAntiSpike() [3/3]

FilterMorphoAntiSpike::FilterMorphoAntiSpike ( const FilterMorphoAntiSpike & other)

Definition at line 279 of file filtermorpho.cpp.

281{
282}

References FilterMorphoAntiSpike(), and m_halfWindowSize.

◆ ~FilterMorphoAntiSpike()

virtual pappso::FilterMorphoAntiSpike::~FilterMorphoAntiSpike ( )
inlinevirtual

Definition at line 180 of file filtermorpho.h.

180{};

Member Function Documentation

◆ buildFilterFromString()

void pappso::FilterMorphoAntiSpike::buildFilterFromString ( const QString & strBuildParams)
overrideprotectedvirtual

build this filter using a string

Parameters
strBuildParamsa string coding the filter and its parameters "filterName|param1;param2;param3"

Implements pappso::FilterNameInterface.

Definition at line 290 of file filtermorpho.cpp.

291{
292 //"antiSpike|2"
293 if(strBuildParams.startsWith("antiSpike|"))
294 {
295 QStringList params = strBuildParams.split("|").back().split(";");
296
297 m_halfWindowSize = params.at(0).toUInt();
298 }
299 else
300 {
301 throw pappso::ExceptionNotRecognized(
302 QString("building FilterMorphoAntiSpike from string %1 is not possible")
303 .arg(strBuildParams));
304 }
305}

References m_halfWindowSize.

Referenced by FilterMorphoAntiSpike().

◆ filter()

Trace & FilterMorphoAntiSpike::filter ( Trace & data_points) const
overridevirtual

Implements pappso::FilterInterface.

Definition at line 336 of file filtermorpho.cpp.

337{
338 // qDebug();
339 if(m_halfWindowSize == 0)
340 return data_points;
341 if(data_points.size() < m_halfWindowSize)
342 return data_points;
343 Trace old_trace(data_points);
344 auto it = old_trace.begin();
345 auto it_target = data_points.begin();
346 auto itw = old_trace.begin();
347
348 auto itend = old_trace.end() - m_halfWindowSize - 1;
349 // new_trace.reserve(data_points.size());
350
351 // qDebug();
352 while((it != old_trace.end()) && (std::distance(old_trace.begin(), it) < (int)m_halfWindowSize))
353 {
354 // no anti spike at the begining of the signal
355 it++;
356 it_target++;
357 }
358 // qDebug();
359 while((it != itend) && (it != old_trace.end()))
360 {
361 // qDebug();
362 auto itwend = it + m_halfWindowSize + 1;
363 itw = findDifferentYvalue(it - m_halfWindowSize, it + 1, 0);
364 if(itw == it)
365 {
366 // qDebug();
367 itw = findDifferentYvalue(it + 1, itwend, 0);
368 if(itw == itwend)
369 {
370 it_target->y = 0;
371 }
372 // qDebug();
373 }
374
375 // qDebug();
376 it++;
377 it_target++;
378 }
379
380 return data_points;
381}
std::vector< DataPoint >::iterator findDifferentYvalue(std::vector< DataPoint >::iterator begin, std::vector< DataPoint >::iterator end, const double &y_value)
find the first element in which Y is different of value
Definition trace.cpp:121

References pappso::findDifferentYvalue(), and m_halfWindowSize.

◆ getHalfWindowSize()

std::size_t FilterMorphoAntiSpike::getHalfWindowSize ( ) const

Definition at line 331 of file filtermorpho.cpp.

332{
333 return m_halfWindowSize;
334}

References m_halfWindowSize.

◆ name()

QString pappso::FilterMorphoAntiSpike::name ( ) const
overridevirtual

Implements pappso::FilterNameInterface.

Definition at line 316 of file filtermorpho.cpp.

317{
318 return "antiSpike";
319}

◆ operator=()

FilterMorphoAntiSpike & FilterMorphoAntiSpike::operator= ( const FilterMorphoAntiSpike & other)

Definition at line 323 of file filtermorpho.cpp.

324{
326
327 return *this;
328}

References FilterMorphoAntiSpike(), and m_halfWindowSize.

◆ toString()

QString pappso::FilterMorphoAntiSpike::toString ( ) const
overridevirtual

Implements pappso::FilterNameInterface.

Definition at line 308 of file filtermorpho.cpp.

309{
310 QString strCode = QString("antiSpike|%1").arg(m_halfWindowSize);
311
312 return strCode;
313}

References m_halfWindowSize.

Member Data Documentation

◆ m_halfWindowSize

std::size_t pappso::FilterMorphoAntiSpike::m_halfWindowSize = 0
private

The documentation for this class was generated from the following files: