Last updated on 2026-02-16 10:51:41 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.10.0 | 38.32 | 822.15 | 860.47 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.10.0 | 24.87 | 544.88 | 569.75 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.10.0 | 68.00 | 1353.34 | 1421.34 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.10.0 | 67.00 | 1360.82 | 1427.82 | OK | |
| r-devel-macos-arm64 | 0.10.0 | 8.00 | 122.00 | 130.00 | OK | |
| r-devel-windows-x86_64 | 0.10.0 | 39.00 | 585.00 | 624.00 | OK | |
| r-patched-linux-x86_64 | 0.10.0 | 52.06 | 736.08 | 788.14 | OK | |
| r-release-linux-x86_64 | 0.10.0 | 36.48 | 743.52 | 780.00 | OK | |
| r-release-macos-arm64 | 0.10.0 | OK | ||||
| r-release-macos-x86_64 | 0.10.0 | 26.00 | 542.00 | 568.00 | OK | |
| r-release-windows-x86_64 | 0.10.0 | 37.00 | 545.00 | 582.00 | ERROR | |
| r-oldrel-macos-arm64 | 0.10.0 | 8.00 | 128.00 | 136.00 | ERROR | |
| r-oldrel-macos-x86_64 | 0.10.0 | 28.00 | 1098.00 | 1126.00 | ERROR | |
| r-oldrel-windows-x86_64 | 0.10.0 | 54.00 | 676.00 | 730.00 | ERROR |
Version: 0.10.0
Check: tests
Result: ERROR
Running 'testthat.R' [205s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
Saving _problems/test_filter_ensemble-294.R
Saving _problems/test_filter_ensemble-307.R
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_isomap.R: 2026-02-13 09:00:50.754758: Isomap START
> test_pipeop_isomap.R: 2026-02-13 09:00:50.755366: constructing knn graph
> test_pipeop_isomap.R: 2026-02-13 09:00:50.76333: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-13 09:00:50.776906: Classical Scaling
> test_pipeop_isomap.R: 2026-02-13 09:00:50.821868: Isomap START
> test_pipeop_isomap.R: 2026-02-13 09:00:50.822396: constructing knn graph
> test_pipeop_isomap.R: 2026-02-13 09:00:50.831181: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-13 09:00:50.849671: Classical Scaling
> test_pipeop_isomap.R: 2026-02-13 09:00:50.889783: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-13 09:00:50.890459: constructing knn graph
> test_pipeop_isomap.R: 2026-02-13 09:00:50.905954: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-13 09:00:50.937383: embedding
> test_pipeop_isomap.R: 2026-02-13 09:00:50.938402: DONE
> test_pipeop_isomap.R: 2026-02-13 09:00:50.961987: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-13 09:00:50.96243: constructing knn graph
> test_pipeop_isomap.R: 2026-02-13 09:00:50.974283: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-13 09:00:51.008355: embedding
> test_pipeop_isomap.R: 2026-02-13 09:00:51.009601: DONE
> test_pipeop_isomap.R: 2026-02-13 09:00:51.09585: Isomap START
> test_pipeop_isomap.R: 2026-02-13 09:00:51.096381: constructing knn graph
> test_pipeop_isomap.R: 2026-02-13 09:00:51.124063: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-13 09:00:51.225994: Classical Scaling
> test_pipeop_isomap.R: 2026-02-13 09:00:51.266827: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-13 09:00:51.267848: constructing knn graph
> test_pipeop_isomap.R: 2026-02-13 09:00:51.29032: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-13 09:00:51.531412: embedding
> test_pipeop_isomap.R: 2026-02-13 09:00:51.536726: DONE
> test_pipeop_isomap.R: 2026-02-13 09:00:51.711518: Isomap START
> test_pipeop_isomap.R: 2026-02-13 09:00:51.71208: constructing knn graph
> test_pipeop_isomap.R: 2026-02-13 09:00:51.721417: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-13 09:00:51.736002: Classical Scaling
> test_pipeop_isomap.R: 2026-02-13 09:00:51.770082: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-13 09:00:51.770851: constructing knn graph
> test_pipeop_isomap.R: 2026-02-13 09:00:51.801996: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-13 09:00:51.843593: embedding
> test_pipeop_isomap.R: 2026-02-13 09:00:51.844916: DONE
> test_pipeop_isomap.R: 2026-02-13 09:00:52.015526: Isomap START
> test_pipeop_isomap.R: 2026-02-13 09:00:52.015996: constructing knn graph
> test_pipeop_isomap.R: 2026-02-13 09:00:52.022663: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-13 09:00:52.037437: Classical Scaling
> test_pipeop_isomap.R: 2026-02-13 09:00:52.088426: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-13 09:00:52.089099: constructing knn graph
> test_pipeop_isomap.R: 2026-02-13 09:00:52.100287: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-13 09:00:52.14018: embedding
> test_pipeop_isomap.R: 2026-02-13 09:00:52.141238: DONE
> test_pipeop_isomap.R: 2026-02-13 09:00:52.224095: Isomap START
> test_pipeop_isomap.R: 2026-02-13 09:00:52.22457: constructing knn graph
> test_pipeop_isomap.R: 2026-02-13 09:00:52.231929: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-13 09:00:52.249026: Classical Scaling
> test_pipeop_isomap.R: 2026-02-13 09:00:52.306432: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-13 09:00:52.306975: constructing knn graph
> test_pipeop_isomap.R: 2026-02-13 09:00:52.33401: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-13 09:00:52.37637: embedding
> test_pipeop_isomap.R: 2026-02-13 09:00:52.377387: DONE
> test_pipeop_isomap.R: 2026-02-13 09:00:52.438274: Isomap START
> test_pipeop_isomap.R: 2026-02-13 09:00:52.438676: constructing knn graph
> test_pipeop_isomap.R: 2026-02-13 09:00:52.446325: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-13 09:00:52.462976: Classical Scaling
> test_pipeop_isomap.R: 2026-02-13 09:00:52.514154: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-13 09:00:52.514855: constructing knn graph
> test_pipeop_isomap.R: 2026-02-13 09:00:52.528736: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-13 09:00:52.567282: embedding
> test_pipeop_isomap.R: 2026-02-13 09:00:52.568452: DONE
> test_pipeop_isomap.R: 2026-02-13 09:00:52.644199: Isomap START
> test_pipeop_isomap.R: 2026-02-13 09:00:52.644692: constructing knn graph
> test_pipeop_isomap.R: 2026-02-13 09:00:52.652022: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-13 09:00:52.66937: Classical Scaling
> test_pipeop_isomap.R: 2026-02-13 09:00:52.721821: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-13 09:00:52.722474: constructing knn graph
> test_pipeop_isomap.R: 2026-02-13 09:00:52.741441: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-13 09:00:52.776554: embedding
> test_pipeop_isomap.R: 2026-02-13 09:00:52.777655: DONE
> test_pipeop_isomap.R: 2026-02-13 09:00:52.871219: Isomap START
> test_pipeop_isomap.R: 2026-02-13 09:00:52.871847: constructing knn graph
> test_pipeop_isomap.R: 2026-02-13 09:00:52.879529: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-13 09:00:52.897222: Classical Scaling
> test_pipeop_isomap.R: 2026-02-13 09:00:52.981468: Isomap START
> test_pipeop_isomap.R: 2026-02-13 09:00:52.981949: constructing knn graph
> test_pipeop_isomap.R: 2026-02-13 09:00:52.990294: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-13 09:00:53.008134: Classical Scaling
> test_pipeop_isomap.R: 2026-02-13 09:00:53.033176: Isomap START
> test_pipeop_isomap.R: 2026-02-13 09:00:53.033652: constructing knn graph
> test_pipeop_isomap.R: 2026-02-13 09:00:53.042864: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-13 09:00:53.060754: Classical Scaling
> test_pipeop_nmf.R: [PipeOpNMFstate]
> test_pipeop_nmf.R: [PipeOpNMFstate]
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_textvectorizer.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_pipeop_textvectorizer.R: Use 'as(., "TsparseMatrix")' instead.
> test_pipeop_textvectorizer.R: See help("Deprecated") and help("Matrix-deprecated").
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 2 | WARN 0 | SKIP 100 | PASS 13055 ]
══ Skipped tests (100) ═════════════════════════════════════════════════════════
• On CRAN (96): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_datefeatures.R:10:3', 'test_pipeop_encodeimpact.R:11:3',
'test_pipeop_encodepl.R:5:3', 'test_pipeop_encodepl.R:72:3',
'test_pipeop_encodelmer.R:15:3', 'test_pipeop_encodelmer.R:37:3',
'test_pipeop_encodelmer.R:80:3', 'test_pipeop_featureunion.R:9:3',
'test_pipeop_featureunion.R:134:3', 'test_pipeop_filter.R:7:3',
'test_pipeop_fixfactors.R:9:3', 'test_pipeop_ensemble.R:6:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_impute.R:4:3', 'test_pipeop_imputelearner.R:43:3',
'test_pipeop_isomap.R:10:3', 'test_pipeop_kernelpca.R:9:3',
'test_pipeop_learner.R:17:3', 'test_pipeop_info.R:6:3',
'test_pipeop_learnerpicvplus.R:163:3', 'test_pipeop_missind.R:6:3',
'test_pipeop_modelmatrix.R:7:3', 'test_pipeop_multiplicityexply.R:9:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_mutate.R:9:3',
'test_pipeop_multiplicityimply.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_ovr.R:9:3', 'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_nmf.R:6:3', 'test_pipeop_scale.R:6:3',
'test_pipeop_scale.R:10:3', 'test_pipeop_scalemaxabs.R:6:3',
'test_pipeop_scalerange.R:7:3', 'test_pipeop_select.R:9:3',
'test_pipeop_smote.R:10:3', 'test_pipeop_smotenc.R:8:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_filter_ensemble.R:294:3'): FilterEnsemble ignores NA scores from wrapped filters ──
Expected `all(is.nan(permutation_filter$scores[task$feature_names]))` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_filter_ensemble.R:307:3'): FilterEnsemble ignores NA scores from wrapped filters ──
Expected `all.equal(object, expected, check.environment = FALSE, ...)` to be TRUE.
Differences:
`actual` is a character vector ('Mean relative difference: 0.3558462')
`expected` is a logical vector (TRUE)
Backtrace:
▆
1. └─global expect_equal(combined_scores, variance_scores * weights[["variance"]]) at test_filter_ensemble.R:307:3
2. └─testthat::expect_true(...)
[ FAIL 2 | WARN 0 | SKIP 100 | PASS 13055 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-windows-x86_64
Version: 0.10.0
Check: examples
Result: ERROR
Running examples in ‘mlr3pipelines-Ex.R’ failed
The error most likely occurred in:
> ### Name: mlr_pipeops_nmf
> ### Title: Non-negative Matrix Factorization
> ### Aliases: mlr_pipeops_nmf PipeOpNMF
>
> ### ** Examples
>
> ## Don't show:
> if (mlr3misc::require_namespaces(c("NMF", "MASS"), quietly = TRUE)) withAutoprint({ # examplesIf
+ ## End(Don't show)
+ ## Don't show:
+ # NMF attaches these packages to search path on load, #929
+ lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"), detach, character.only = TRUE)
+ ## End(Don't show)
+ library("mlr3")
+
+ task = tsk("iris")
+ pop = po("nmf")
+
+ task$data()
+ pop$train(list(task))[[1]]$data()
+
+ pop$state
+ ## Don't show:
+ # BiocGenerics overwrites printer for our tables mlr-org/mlr3#1112
+ # Necessary as detaching packages does not remove registered S3 methods
+ suppressWarnings(try(rm("format.list", envir = .BaseNamespaceEnv$.__S3MethodsTable__.), silent = TRUE))
+ ## End(Don't show)
+ ## Don't show:
+ }) # examplesIf
> lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"),
+ detach, character.only = TRUE)
Error in FUN(X[[i]], ...) : invalid 'name' argument
Calls: withAutoprint ... withVisible -> eval -> eval -> lapply -> lapply -> FUN
Execution halted
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [110s/54s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-02-16 22:07:14.360336: Isomap START
> test_pipeop_isomap.R: 2026-02-16 22:07:14.360607: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 22:07:14.363783: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 22:07:14.370104: Classical Scaling
> test_pipeop_isomap.R: 2026-02-16 22:07:14.383835: Isomap START
> test_pipeop_isomap.R: 2026-02-16 22:07:14.38396: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 22:07:14.386494: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 22:07:14.393106: Classical Scaling
> test_pipeop_isomap.R: 2026-02-16 22:07:14.400467: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-16 22:07:14.400727: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 22:07:14.405441: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 22:07:14.420592: embedding
> test_pipeop_isomap.R: 2026-02-16 22:07:14.421043: DONE
> test_pipeop_isomap.R: 2026-02-16 22:07:14.427927: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-16 22:07:14.428068: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 22:07:14.432498: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 22:07:14.447118: embedding
> test_pipeop_isomap.R: 2026-02-16 22:07:14.447496: DONE
> test_pipeop_isomap.R: 2026-02-16 22:07:14.468921: Isomap START
> test_pipeop_isomap.R: 2026-02-16 22:07:14.469063: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 22:07:14.473565: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 22:07:14.507197: Classical Scaling
> test_pipeop_isomap.R: 2026-02-16 22:07:14.515808: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-16 22:07:14.515999: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 22:07:14.525236: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 22:07:14.608536: embedding
> test_pipeop_isomap.R: 2026-02-16 22:07:14.609838: DONE
> test_pipeop_isomap.R: 2026-02-16 22:07:14.644336: Isomap START
> test_pipeop_isomap.R: 2026-02-16 22:07:14.644468: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 22:07:14.646801: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 22:07:14.652886: Classical Scaling
> test_pipeop_isomap.R: 2026-02-16 22:07:14.668624: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-16 22:07:14.6689: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 22:07:14.674158: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 22:07:14.689213: embedding
> test_pipeop_isomap.R: 2026-02-16 22:07:14.689633: DONE
> test_pipeop_isomap.R: 2026-02-16 22:07:14.720859: Isomap START
> test_pipeop_isomap.R: 2026-02-16 22:07:14.720994: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 22:07:14.72326: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 22:07:14.729308: Classical Scaling
> test_pipeop_isomap.R: 2026-02-16 22:07:14.740271: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-16 22:07:14.740439: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 22:07:14.745351: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 22:07:14.761401: embedding
> test_pipeop_isomap.R: 2026-02-16 22:07:14.761855: DONE
> test_pipeop_isomap.R: 2026-02-16 22:07:14.779262: Isomap START
> test_pipeop_isomap.R: 2026-02-16 22:07:14.779384: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 22:07:14.781442: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 22:07:14.786797: Classical Scaling
> test_pipeop_isomap.R: 2026-02-16 22:07:14.796686: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-16 22:07:14.796845: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 22:07:14.800786: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 22:07:14.813821: embedding
> test_pipeop_isomap.R: 2026-02-16 22:07:14.814106: DONE
> test_pipeop_isomap.R: 2026-02-16 22:07:14.833695: Isomap START
> test_pipeop_isomap.R: 2026-02-16 22:07:14.833847: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 22:07:14.836395: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 22:07:14.842625: Classical Scaling
> test_pipeop_isomap.R: 2026-02-16 22:07:14.854685: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-16 22:07:14.854883: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 22:07:14.859371: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 22:07:14.874103: embedding
> test_pipeop_isomap.R: 2026-02-16 22:07:14.874464: DONE
> test_pipeop_isomap.R: 2026-02-16 22:07:14.893025: Isomap START
> test_pipeop_isomap.R: 2026-02-16 22:07:14.893162: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 22:07:14.895518: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 22:07:14.901524: Classical Scaling
> test_pipeop_isomap.R: 2026-02-16 22:07:14.913449: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-16 22:07:14.913648: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 22:07:14.918391: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 22:07:14.932697: embedding
> test_pipeop_isomap.R: 2026-02-16 22:07:14.933164: DONE
> test_pipeop_isomap.R: 2026-02-16 22:07:14.966965: Isomap START
> test_pipeop_isomap.R: 2026-02-16 22:07:14.967154: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 22:07:14.969755: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 22:07:14.97681: Classical Scaling
> test_pipeop_isomap.R: 2026-02-16 22:07:14.996055: Isomap START
> test_pipeop_isomap.R: 2026-02-16 22:07:14.996198: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 22:07:14.998347: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 22:07:15.004296: Classical Scaling
> test_pipeop_isomap.R: 2026-02-16 22:07:15.009321: Isomap START
> test_pipeop_isomap.R: 2026-02-16 22:07:15.009424: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 22:07:15.011456: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 22:07:15.017039: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_histbin.R:7:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_rowapply.R:6:3', 'test_pipeop_scalemaxabs.R:6:3',
'test_pipeop_scalerange.R:7:3', 'test_pipeop_select.R:9:3',
'test_pipeop_smote.R:10:3', 'test_pipeop_smotenc.R:8:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [405s/488s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1]
> test_pipeop_blsmote.R: "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1]
> test_pipeop_blsmote.R: "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-02-16 01:19:39.548694: Isomap START
> test_pipeop_isomap.R: 2026-02-16 01:19:39.550304: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 01:19:39.568614: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 01:19:39.612256: Classical Scaling
> test_pipeop_isomap.R: 2026-02-16 01:19:39.698182: Isomap START
> test_pipeop_isomap.R: 2026-02-16 01:19:39.698482: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 01:19:39.725578: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 01:19:39.791052: Classical Scaling
> test_pipeop_isomap.R: 2026-02-16 01:19:39.815405: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-16 01:19:39.815839: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 01:19:39.856981: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 01:19:39.917252: embedding
> test_pipeop_isomap.R: 2026-02-16 01:19:39.919486: DONE
> test_pipeop_isomap.R: 2026-02-16 01:19:39.966434: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-16 01:19:39.966743: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 01:19:39.994022: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 01:19:40.060383: embedding
> test_pipeop_isomap.R: 2026-02-16 01:19:40.061524: DONE
> test_pipeop_isomap.R: 2026-02-16 01:19:40.151963: Isomap START
> test_pipeop_isomap.R: 2026-02-16 01:19:40.152288: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 01:19:40.191813: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 01:19:40.373033: Classical Scaling
> test_pipeop_isomap.R: 2026-02-16 01:19:40.514415: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-16 01:19:40.514897: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 01:19:40.578926: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 01:19:40.954297: embedding
> test_pipeop_isomap.R: 2026-02-16 01:19:41.022126: DONE
> test_pipeop_isomap.R: 2026-02-16 01:19:41.47154: Isomap START
> test_pipeop_isomap.R: 2026-02-16 01:19:41.471876: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 01:19:41.489329: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 01:19:41.54615: Classical Scaling
> test_pipeop_isomap.R: 2026-02-16 01:19:41.779564: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-16 01:19:41.780498: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 01:19:41.847743: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 01:19:41.913429: embedding
> test_pipeop_isomap.R: 2026-02-16 01:19:41.916243: DONE
> test_pipeop_isomap.R: 2026-02-16 01:19:42.116544: Isomap START
> test_pipeop_isomap.R: 2026-02-16 01:19:42.116862: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 01:19:42.125108: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 01:19:42.147797: Classical Scaling
> test_pipeop_isomap.R: 2026-02-16 01:19:42.208127: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-16 01:19:42.208782: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 01:19:43.262381: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 01:19:43.321791: embedding
> test_pipeop_isomap.R: 2026-02-16 01:19:43.322938: DONE
> test_pipeop_isomap.R: 2026-02-16 01:19:43.438425: Isomap START
> test_pipeop_isomap.R: 2026-02-16 01:19:43.447508: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 01:19:43.485374: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 01:19:43.521818: Classical Scaling
> test_pipeop_isomap.R: 2026-02-16 01:19:43.603275: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-16 01:19:43.603706: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 01:19:43.639667: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 01:19:43.706951: embedding
> test_pipeop_isomap.R: 2026-02-16 01:19:43.71062: DONE
> test_pipeop_isomap.R: 2026-02-16 01:19:43.84813: Isomap START
> test_pipeop_isomap.R: 2026-02-16 01:19:43.848474: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 01:19:43.871512: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 01:19:43.907159: Classical Scaling
> test_pipeop_isomap.R: 2026-02-16 01:19:44.028812: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-16 01:19:44.029331: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 01:19:44.071538: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 01:19:44.156919: embedding
> test_pipeop_isomap.R: 2026-02-16 01:19:44.158078: DONE
> test_pipeop_isomap.R: 2026-02-16 01:19:44.308644: Isomap START
> test_pipeop_isomap.R: 2026-02-16 01:19:44.308967: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 01:19:44.33649: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 01:19:44.382417: Classical Scaling
> test_pipeop_isomap.R: 2026-02-16 01:19:44.590732: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-16 01:19:44.591834: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 01:19:44.768867: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 01:19:44.85319: embedding
> test_pipeop_isomap.R: 2026-02-16 01:19:44.869015: DONE
> test_pipeop_isomap.R: 2026-02-16 01:19:45.039961: Isomap START
> test_pipeop_isomap.R: 2026-02-16 01:19:45.047122: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 01:19:45.055545: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 01:19:45.090075: Classical Scaling
> test_pipeop_isomap.R: 2026-02-16 01:19:45.198624: Isomap START
> test_pipeop_isomap.R: 2026-02-16 01:19:45.198938: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 01:19:45.206674: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 01:19:45.230863: Classical Scaling
> test_pipeop_isomap.R: 2026-02-16 01:19:45.257469: Isomap START
> test_pipeop_isomap.R: 2026-02-16 01:19:45.258286: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 01:19:45.271111: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 01:19:45.317929: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R:
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_textvectorizer.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_pipeop_textvectorizer.R: Use 'as(., "TsparseMatrix")' instead.
> test_pipeop_textvectorizer.R: See help("Deprecated") and help("Matrix-deprecated").
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_nmf.R:6:3', 'test_pipeop_randomprojection.R:6:3',
'test_pipeop_randomresponse.R:5:3', 'test_pipeop_removeconstants.R:6:3',
'test_pipeop_renamecolumns.R:6:3', 'test_pipeop_replicate.R:9:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_rowapply.R:6:3', 'test_pipeop_smotenc.R:8:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64
Version: 0.10.0
Check: tests
Result: ERROR
Running 'testthat.R' [293s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R:
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R:
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-02-13 10:38:09.229289: Isomap START
> test_pipeop_isomap.R: 2026-02-13 10:38:09.230367: constructing knn graph
> test_pipeop_isomap.R: 2026-02-13 10:38:09.244904: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-13 10:38:09.266736: Classical Scaling
> test_pipeop_isomap.R: 2026-02-13 10:38:09.340793: Isomap START
> test_pipeop_isomap.R: 2026-02-13 10:38:09.341365: constructing knn graph
> test_pipeop_isomap.R: 2026-02-13 10:38:09.349336: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-13 10:38:09.365758: Classical Scaling
> test_pipeop_isomap.R: 2026-02-13 10:38:09.404872: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-13 10:38:09.40557: constructing knn graph
> test_pipeop_isomap.R: 2026-02-13 10:38:09.423121: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-13 10:38:09.469919: embedding
> test_pipeop_isomap.R: 2026-02-13 10:38:09.471973: DONE
> test_pipeop_isomap.R: 2026-02-13 10:38:09.50609: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-13 10:38:09.506705: constructing knn graph
> test_pipeop_isomap.R: 2026-02-13 10:38:09.52653: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-13 10:38:09.571266: embedding
> test_pipeop_isomap.R: 2026-02-13 10:38:09.573307: DONE
> test_pipeop_isomap.R: 2026-02-13 10:38:09.715842: Isomap START
> test_pipeop_isomap.R: 2026-02-13 10:38:09.71655: constructing knn graph
> test_pipeop_isomap.R: 2026-02-13 10:38:09.84655: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-13 10:38:09.962727: Classical Scaling
> test_pipeop_isomap.R: 2026-02-13 10:38:10.020612: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-13 10:38:10.021583: constructing knn graph
> test_pipeop_isomap.R: 2026-02-13 10:38:10.071357: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-13 10:38:10.304629: embedding
> test_pipeop_isomap.R: 2026-02-13 10:38:10.310094: DONE
> test_pipeop_isomap.R: 2026-02-13 10:38:10.542462: Isomap START
> test_pipeop_isomap.R: 2026-02-13 10:38:10.54315: constructing knn graph
> test_pipeop_isomap.R: 2026-02-13 10:38:10.569222: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-13 10:38:10.591903: Classical Scaling
> test_pipeop_isomap.R: 2026-02-13 10:38:10.643749: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-13 10:38:10.644677: constructing knn graph
> test_pipeop_isomap.R: 2026-02-13 10:38:10.66599: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-13 10:38:10.716407: embedding
> test_pipeop_isomap.R: 2026-02-13 10:38:10.718145: DONE
> test_pipeop_isomap.R: 2026-02-13 10:38:10.957082: Isomap START
> test_pipeop_isomap.R: 2026-02-13 10:38:10.957791: constructing knn graph
> test_pipeop_isomap.R: 2026-02-13 10:38:10.969738: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-13 10:38:10.992641: Classical Scaling
> test_pipeop_isomap.R: 2026-02-13 10:38:11.075648: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-13 10:38:11.076702: constructing knn graph
> test_pipeop_isomap.R: 2026-02-13 10:38:11.099216: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-13 10:38:11.149513: embedding
> test_pipeop_isomap.R: 2026-02-13 10:38:11.151301: DONE
> test_pipeop_isomap.R: 2026-02-13 10:38:11.30049: Isomap START
> test_pipeop_isomap.R: 2026-02-13 10:38:11.301196: constructing knn graph
> test_pipeop_isomap.R: 2026-02-13 10:38:11.313299: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-13 10:38:11.336138: Classical Scaling
> test_pipeop_isomap.R: 2026-02-13 10:38:11.430021: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-13 10:38:11.431368: constructing knn graph
> test_pipeop_isomap.R: 2026-02-13 10:38:11.457039: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-13 10:38:11.511413: embedding
> test_pipeop_isomap.R: 2026-02-13 10:38:11.513479: DONE
> test_pipeop_isomap.R: 2026-02-13 10:38:11.664557: Isomap START
> test_pipeop_isomap.R: 2026-02-13 10:38:11.665361: constructing knn graph
> test_pipeop_isomap.R: 2026-02-13 10:38:11.67929: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-13 10:38:11.702051: Classical Scaling
> test_pipeop_isomap.R: 2026-02-13 10:38:11.789662: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-13 10:38:11.790602: constructing knn graph
> test_pipeop_isomap.R: 2026-02-13 10:38:11.814471: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-13 10:38:11.865152: embedding
> test_pipeop_isomap.R: 2026-02-13 10:38:11.867288: DONE
> test_pipeop_isomap.R: 2026-02-13 10:38:12.013574: Isomap START
> test_pipeop_isomap.R: 2026-02-13 10:38:12.01424: constructing knn graph
> test_pipeop_isomap.R: 2026-02-13 10:38:12.025206: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-13 10:38:12.047747: Classical Scaling
> test_pipeop_isomap.R: 2026-02-13 10:38:12.125583: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-13 10:38:12.126486: constructing knn graph
> test_pipeop_isomap.R: 2026-02-13 10:38:12.148764: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-13 10:38:12.198792: embedding
> test_pipeop_isomap.R: 2026-02-13 10:38:12.200427: DONE
> test_pipeop_isomap.R: 2026-02-13 10:38:12.341993: Isomap START
> test_pipeop_isomap.R: 2026-02-13 10:38:12.342716: constructing knn graph
> test_pipeop_isomap.R: 2026-02-13 10:38:12.354536: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-13 10:38:12.380858: Classical Scaling
> test_pipeop_isomap.R: 2026-02-13 10:38:12.516606: Isomap START
> test_pipeop_isomap.R: 2026-02-13 10:38:12.517185: constructing knn graph
> test_pipeop_isomap.R: 2026-02-13 10:38:12.525579: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-13 10:38:12.541463: Classical Scaling
> test_pipeop_isomap.R: 2026-02-13 10:38:12.605859: Isomap START
> test_pipeop_isomap.R: 2026-02-13 10:38:12.606675: constructing knn graph
> test_pipeop_isomap.R: 2026-02-13 10:38:12.619377: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-13 10:38:12.641754: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_textvectorizer.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_pipeop_textvectorizer.R: Use 'as(., "TsparseMatrix")' instead.
> test_pipeop_textvectorizer.R: See help("Deprecated") and help("Matrix-deprecated").
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_boxcox.R:7:3',
'test_pipeop_classbalancing.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_rowapply.R:6:3', 'test_pipeop_select.R:9:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-windows-x86_64