Last updated on 2026-05-20 13:51:07 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.0.3 | 68.79 | 205.03 | 273.82 | OK | |
| r-devel-linux-x86_64-debian-gcc | 2.0.3 | 85.56 | 140.11 | 225.67 | OK | |
| r-devel-linux-x86_64-fedora-clang | 2.0.3 | 100.00 | 341.29 | 441.29 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 2.0.3 | 145.00 | 346.82 | 491.82 | OK | |
| r-devel-windows-x86_64 | 2.0.3 | 97.00 | 269.00 | 366.00 | OK | |
| r-patched-linux-x86_64 | 2.0.2 | 70.64 | 186.48 | 257.12 | OK | |
| r-release-linux-x86_64 | 2.0.3 | 123.16 | 193.36 | 316.52 | OK | |
| r-release-macos-arm64 | 2.0.3 | 16.00 | 70.00 | 86.00 | OK | |
| r-release-macos-x86_64 | 2.0.3 | 44.00 | 229.00 | 273.00 | OK | |
| r-release-windows-x86_64 | 2.0.3 | 100.00 | 224.00 | 324.00 | OK | |
| r-oldrel-macos-arm64 | 2.0.3 | 13.00 | 64.00 | 77.00 | OK | |
| r-oldrel-macos-x86_64 | 2.0.3 | 44.00 | 183.00 | 227.00 | OK | |
| r-oldrel-windows-x86_64 | 2.0.3 | 109.00 | 288.00 | 397.00 | OK |
Version: 2.0.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [8s/22s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(harmony)
Loading required package: Rcpp
• This is Harmony2 version 2.0.3
• Read the guide: run vignette()
• Get help: Visit the website at https://korsunskylab.github.io/harmony2/ and
report issues on https://github.com/immunogenomics/harmony/issues
>
> test_check("harmony")
176exists, retrying for cluster 14 0.755239
129exists, retrying for cluster 27 3.21268
23exists, retrying for cluster 34 1.55754
233exists, retrying for cluster 35 3.22965
246exists, retrying for cluster 37 3.59542
38exists, retrying for cluster 40 3.50889
Saving _problems/test_two_variable-11.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 13 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_two_variable.R:5:1'): (code run outside of `test_that()`) ──────
<std::logic_error/C++Error/error/condition>
Error: inv(): use of LAPACK must be enabled
Backtrace:
▆
1. ├─harmony::RunHarmony(...) at test_two_variable.R:5:1
2. └─harmony:::RunHarmony.default(...)
3. ├─base::tryCatch(...)
4. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
5. └─harmony:::harmonize(harmonyObj, max.iter.harmony, verbose)
6. └─harmonyObj$moe_correct_ridge_cpp()
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 13 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang