Package: ipd
Title: Inference on Predicted Data
Version: 0.4.1
Authors@R: c(
      person(given = "Stephen", family = "Salerno",
        email = "ssalerno@fredhutch.org", role = c("aut", "cre", "cph"),
        comment = c(ORCID = "0000-0003-2763-0494")),
      person(given = "Jiacheng", family = "Miao",
        email = "jmiao24@wisc.edu", role = c("aut")),
      person(given = "Awan", family = "Afiaz",
        email = "aafiaz@uw.edu", role = c("aut")),
      person(given = "Kentaro", family = "Hoffman",
        email = "khoffm3@uw.edu", role = c("aut")),
      person(given = "Jesse", family = "Gronsbell",
        email = "j.gronsbell@utoronto.ca", role = c("aut")),
      person(given = "Jianhui", family = "Gao",
        email = "jianhui.gao@mail.utoronto.ca", role = c("aut")),
      person(given = "David", family = "Cheng",
        email = "dcheng@mgh.harvard.edu", role = c("aut")),
      person(given = "Anna", family = "Neufeld",
        email = "acn2@williams.edu", role = c("aut")),
      person(given = "Qiongshi", family = "Lu",
        email = "qlu@biostat.wisc.edu", role = c("aut")),
      person(given = "Tyler H", family = "McCormick",
        email = "tylermc@uw.edu", role = c("aut")),
      person(given = "Jeffrey T", family = "Leek",
        email = "jtleek@fredhutch.org", role = c("aut")))
Description: Performs valid statistical inference on predicted data (IPD) using recent methods, where for a subset of the data, the outcomes have been predicted by an algorithm. Provides a wrapper function with specified defaults for the type of model and method to be used for estimation and inference. Further provides methods for tidying and summarizing results. Salerno et al., (2025) <doi:10.1093/bioinformatics/btaf055>.
License: MIT + file LICENSE
URL: https://github.com/ipd-tools/ipd, https://ipd-tools.github.io/ipd/
BugReports: https://github.com/ipd-tools/ipd/issues
Depends: R (>= 4.4.0)
Imports: methods, generics, caret, gam, ranger, splines, stats, MASS,
        randomForest, tibble
Suggests: knitr, patchwork, rmarkdown, spelling, testthat (>= 3.0.0),
        tidyverse, xfun (>= 0.51), BiocStyle, BiocManager
VignetteBuilder: knitr
biocViews: Software, StatisticalMethod
Config/testthat/edition: 3
Encoding: UTF-8
RoxygenNote: 7.3.3
Language: en-US
NeedsCompilation: no
Packaged: 2026-03-11 03:23:19 UTC; ssalerno
Author: Stephen Salerno [aut, cre, cph] (ORCID:
    <https://orcid.org/0000-0003-2763-0494>),
  Jiacheng Miao [aut],
  Awan Afiaz [aut],
  Kentaro Hoffman [aut],
  Jesse Gronsbell [aut],
  Jianhui Gao [aut],
  David Cheng [aut],
  Anna Neufeld [aut],
  Qiongshi Lu [aut],
  Tyler H McCormick [aut],
  Jeffrey T Leek [aut]
Maintainer: Stephen Salerno <ssalerno@fredhutch.org>
Repository: CRAN
Date/Publication: 2026-03-11 15:00:09 UTC
Built: R 4.6.0; ; 2026-04-23 04:11:23 UTC; windows
