Visualising and Interpreting Statistical Models Fit to Compositional Data

---

Documentation for package ‘DImodelsVis’ version 1.0.4

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

add_add_var	Add additional variables to data via cartesian product
add_ID_terms	Add identity and interaction terms used in a Diversity-Interactions (DI) model to new data
add_interaction_terms	Add identity and interaction terms used in a Diversity-Interactions (DI) model to new data
add_prediction	Add predictions and uncertainty interval to data using either a model object or model coefficients.
conditional_ternary	DI specific wrapper for conditional ternary diagrams
conditional_ternary_data	Data preparation for conditional ternary diagrams
conditional_ternary_plot	Conditional ternary diagrams
copy_attributes	Copy attributes from one object to another
custom_filter	Special custom filtering for compositional data
get_colours	Return colour-blind friendly colours
get_equi_comms	Get all equi-proportional communities at specific levels of richness
get_shades	Returns shades of colours
gradient_change	DI specific wrapper for visualising change in response over diversity gradient
gradient_change_data	Data preparation for visualising change in response over diversity gradient
gradient_change_plot	Visualise change in response over diversity gradient
grouped_ternary	DI specific wrapper for grouped ternary diagrams
grouped_ternary_data	Prepare data for grouped ternary diagrams
grouped_ternary_plot	Grouped ternary diagrams
group_prop	Combine variable proportions into groups
model_diagnostics	DI specific wrapper of diagnostics plots for regression models with compositional predictors
model_diagnostics_data	Data preparation of diagnostics plots for regression models with compositional predictors
model_diagnostics_plot	Diagnostics plots for regression models with compositional predictors
model_selection	DI specific wrapper for visualising model selection
model_selection_data	Prepare data for visualising model selection
model_selection_plot	Visualise model selection
prediction_contributions	Model term contributions to predicted response
prediction_contributions_data	Model term contributions to predicted response
prediction_contributions_plot	Visualise model term contributions to predicted response
prop_to_tern_proj	Project 3-d compositional data onto x-y plane and vice versa
simplex_path	DI specific for visualising change in response across points in the simplex space
simplex_path_data	Prepare data for visualising change in response across points in the simplex space
simplex_path_plot	Visualising change in response across points in the simplex space
ternary_data	Prepare data for showing contours in ternary diagrams.
ternary_plot	Ternary diagrams
tern_to_prop_proj	Project 3-d compositional data onto x-y plane and vice versa
theme_DI	Default theme for DImodelsVis
visualise_effects	DI specific wrapper of effects plot for compositional variables
visualise_effects_data	Prepare data for effects plots of compositional predictors
visualise_effects_plot	Effects plot for compositional predictors