calcTrep	calcTrep
compareRatios	compareRatios
Dbf4myc	Dbf4myc
guide	guide
loadBed	loadBed
makeGenome	makeGenome
makeLabels	makeLabels
makeRatio	makeRatio
MFAseq	MFAseq
normaliseRatio	normaliseRatio
normalizeRatio	normaliseRatio
plotBed	plotBed
plotCoverage	plotCoverage
plotGenome	plotGenome
plotRatio	plotRatio
plotTrep	plotTrep
rmChr	rmChr
rmOutliers	rmOutliers
runGUI	runGUI
sacCer3	sacCer3
smoothRatio	smoothRatio
sortSeq	sortSeq
syncSeq	syncSeq
TrepDF	TrepDF
trimRatio	trimRatio
W303	W303
W303norm	W303norm
W303_G2	W303_G2
W303_S	W303_S
