## ---- include = FALSE--------------------------------------------------------- knitr::opts_chunk$set( collapse = TRUE, comment = "#", warning = FALSE, message = FALSE ) ## ----------------------------------------------------------------------------- library(dplyr) library(tidyr) chd_smoke <- tribble(~smoke, ~chd_died,~n, TRUE, TRUE,69, TRUE, FALSE, 10263, FALSE, TRUE, 100, FALSE, FALSE, 24008) %>% uncount(n) ## ----------------------------------------------------------------------------- library(twoxtwo) chd_smoke %>% twoxtwo(., exposure = smoke, outcome = chd_died) ## ----------------------------------------------------------------------------- chd_smoke %>% arp(exposure = smoke, outcome = chd_died) ## ----------------------------------------------------------------------------- chd_smoke %>% arp(exposure = smoke, outcome = chd_died, percent = TRUE) ## ----------------------------------------------------------------------------- chd_smoke %>% parp(exposure = smoke, outcome = chd_died) ## ----------------------------------------------------------------------------- chd_smoke %>% parp(exposure = smoke, outcome = chd_died, percent = TRUE) ## ----------------------------------------------------------------------------- chd_smoke %>% parp(exposure = smoke, outcome = chd_died, percent = TRUE, prevalence = 0.2) ## ----------------------------------------------------------------------------- chd_smoke %>% ein(exposure = smoke, outcome = chd_died) ## ----------------------------------------------------------------------------- chd_smoke %>% cin(exposure = smoke, outcome = chd_died) ## ----------------------------------------------------------------------------- chd_smoke %>% ecin(exposure = smoke, outcome = chd_died)