myTAI: Evolutionary Transcriptomics

Investigate the evolution of biological processes by capturing evolutionary signatures in transcriptomes (Drost et al. (2018) <doi:10.1093/bioinformatics/btx835>). This package aims to provide a transcriptome analysis environment to quantify the average evolutionary age of genes contributing to a transcriptome of interest.

Version:	2.3.3
Depends:	R (≥ 4.1)
Imports:	S7, patchwork, purrr, tidyr, Rcpp, memoise, fitdistrplus (≥ 1.1-5), dplyr (≥ 0.3.0), RColorBrewer (≥ 1.1-2), ggplot2 (≥ 1.0.1), ggforce, ggridges, ggtext, readr (≥ 0.2.2), tibble, ggplotify, ggrepel, Matrix, pheatmap
LinkingTo:	RcppArmadillo, RcppThread, Rcpp
Suggests:	knitr (≥ 1.6), rmarkdown (≥ 0.3.3), testthat (≥ 0.9.1), mgcv, Seurat, SeuratObject, uwot, decor, DESeq2, gganimate, taxize
Published:	2025-11-07
DOI:	10.32614/CRAN.package.myTAI
Author:	Hajk-Georg Drost [aut, cre], Stefan Manolache [aut, ctb], Jaruwatana Sodai Lotharukpong [aut, ctb], Nikola Kalábová [aut, ctb], Filipa Martins Costa [aut, ctb], Kristian K Ullrich [aut, ctb]
Maintainer:	Hajk-Georg Drost <hajk-georg.drost at tuebingen.mpg.de>
BugReports:	https://github.com/drostlab/myTAI/issues
License:	GPL-2
URL:	https://drostlab.github.io/myTAI/
NeedsCompilation:	yes
Citation:	myTAI citation info
Materials:	README, NEWS
CRAN checks:	myTAI results

Documentation:

Reference manual:	myTAI.html , myTAI.pdf
Vignettes:	Getting started (source, R code) Other evolutionary and expression indices (source, R code) Bring your datasets into myTAI (source, R code) Gene age inference (source) Break TAI patterns using gaTAI (source, R code) Beautiful plots made via myTAI (source, R code) Statistical testing with myTAI (source, R code) Transforming dataset for myTAI (source, R code) taxonomy (source, R code)

Downloads:

Package source:	myTAI_2.3.3.tar.gz
Windows binaries:	r-devel: not available, r-release: myTAI_2.3.3.zip, r-oldrel: myTAI_2.3.3.zip
macOS binaries:	r-release (arm64): myTAI_2.3.3.tgz, r-oldrel (arm64): myTAI_2.3.3.tgz, r-release (x86_64): myTAI_2.3.3.tgz, r-oldrel (x86_64): myTAI_2.3.3.tgz
Old sources:	myTAI archive

Linking:

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