Facilitates the post-Genome Wide Association Studies (GWAS) and Quantitative Trait Loci (QTL) analysis of identifying candidate genes within user-defined search window, based on the identified Single Nucleotide Polymorphisms (SNPs) as given by Mazumder AK (2024) <doi:10.1038/s41598-024-66903-3>. It supports candidate gene analysis for wheat and rice. Just import your GWAS result as explained in the sample_data file and the function does all the manual search and retrieve candidate genes for you, while exporting the results into ready-to-use output.
| Version: | 2.0.1 |
| Depends: | R (≥ 3.5) |
| Imports: | readr, stringr, utils, httr, rvest, xml2, writexl, vcfR, ggplot2, ggrepel |
| Suggests: | knitr, rmarkdown, devtools |
| Published: | 2025-03-29 |
| DOI: | 10.32614/CRAN.package.geneNR |
| Author: | Rajamani Nirmalaruban [aut, cre, cph], R. Suvitha [aut], Rajbir Yadav [aut], Meda Alekya [aut], Amit Kumar Mazumder [aut], Subramani Sugumar [aut], Prashanth babu [aut], Manjeet Kumar [aut], Kiran B Gaikwad [aut], Naresh Kumar Bainsla [aut], S. Bhaskar Reddy [aut] |
| Maintainer: | Rajamani Nirmalaruban <nirmalaruban97 at gmail.com> |
| License: | CC BY 4.0 |
| Copyright: | (C) 2025 Nirmalaruban |
| NeedsCompilation: | no |
| Materials: | NEWS |
| CRAN checks: | geneNR results |
| Reference manual: | geneNR.html , geneNR.pdf |
| Vignettes: |
Introduction of 'geneNR' (source, R code) |
| Package source: | geneNR_2.0.1.tar.gz |
| Windows binaries: | r-devel: geneNR_2.0.1.zip, r-release: geneNR_2.0.1.zip, r-oldrel: geneNR_2.0.1.zip |
| macOS binaries: | r-release (arm64): geneNR_2.0.1.tgz, r-oldrel (arm64): geneNR_2.0.1.tgz, r-release (x86_64): geneNR_2.0.1.tgz, r-oldrel (x86_64): geneNR_2.0.1.tgz |
| Old sources: | geneNR archive |
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