Last updated on 2026-01-22 18:50:37 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.3 | 23.99 | 305.73 | 329.72 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0.3 | 17.25 | 212.48 | 229.73 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.0.3 | 44.00 | 490.94 | 534.94 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.0.3 | 43.00 | 474.50 | 517.50 | OK | |
| r-devel-windows-x86_64 | 1.0.3 | 30.00 | 1494.00 | 1524.00 | ERROR | |
| r-patched-linux-x86_64 | 1.0.3 | 23.60 | 283.18 | 306.78 | OK | |
| r-release-linux-x86_64 | 1.0.3 | 25.36 | 282.91 | 308.27 | OK | |
| r-release-macos-arm64 | 1.0.3 | OK | ||||
| r-release-macos-x86_64 | 1.0.3 | 13.00 | 294.00 | 307.00 | OK | |
| r-release-windows-x86_64 | 1.0.3 | 30.00 | 298.00 | 328.00 | OK | |
| r-oldrel-macos-arm64 | 1.0.3 | OK | ||||
| r-oldrel-macos-x86_64 | 1.0.3 | 13.00 | 182.00 | 195.00 | OK | |
| r-oldrel-windows-x86_64 | 1.0.3 | 40.00 | 429.00 | 469.00 | OK |
Version: 1.0.3
Check: tests
Result: ERROR
Running 'testthat.R' [21m]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(missCompare)
Attaching package: 'missCompare'
The following object is masked from 'package:stats':
simulate
>
> test_check("missCompare")
[1] "random replacement imputation - in progress"
[1] "mice mixed imputation - in progress"
[1] "mi imputation - in progress"
starting worker pid=27036 on localhost:11980 at 18:13:26.947
starting worker pid=72204 on localhost:11980 at 18:13:26.975
Error in unserialize(node$con) : error reading from connection
Calls: <Anonymous> -> workLoop -> makeSOCKmaster
Execution halted
Error in unserialize(node$con) : unknown input format
Calls: <Anonymous> -> workLoop -> makeSOCKmaster
Execution halted
Saving _problems/test.imp_data-22.R
[1] "random replacement imputation - in progress"
[1] "mice mixed imputation - in progress"
[1] "mi imputation - in progress"
starting worker pid=84976 on localhost:11980 at 18:17:32.046
starting worker pid=109852 on localhost:11980 at 18:17:32.070
Error in unserialize(node$con) : error reading from connection
Calls: <Anonymous> -> workLoop -> makeSOCKmaster
Execution halted
Error in unserialize(node$con) : unknown input format
Calls: <Anonymous> -> workLoop -> makeSOCKmaster
Execution halted
Saving _problems/test.imp_data-28.R
[1] "random replacement imputation - in progress"
[1] "Median imputation - in progress"
[1] "Mean imputation - in progress"
[1] "missMDA regularized imputation - in progress"
[1] "missMDA EM imputation - in progress"
[1] "pcaMethods PPCA imputation - in progress"
[1] "pcaMethods svdImpute imputation - in progress"
[1] "pcaMethods BPCA imputation - in progress"
[1] "pcaMethods NIPALS imputation - in progress"
[1] "pcaMethods NLPCA imputation - in progress"
[1] "mice mixed imputation - in progress"
[1] "mi imputation - in progress"
starting worker pid=46020 on localhost:11980 at 18:21:42.506
starting worker pid=18040 on localhost:11980 at 18:21:42.559
Error in unserialize(node$con) : error reading from connection
Calls: <Anonymous> -> workLoop -> makeSOCKmaster
Execution halted
Error in unserialize(node$con) : unknown input format
Calls: <Anonymous> -> workLoop -> makeSOCKmaster
Execution halted
Saving _problems/test.imp_data-34.R
[1] "random replacement imputation - in progress"
[1] "Median imputation - in progress"
[1] "Mean imputation - in progress"
[1] "missMDA regularized imputation - in progress"
[1] "missMDA EM imputation - in progress"
[1] "pcaMethods PPCA imputation - in progress"
[1] "pcaMethods svdImpute imputation - in progress"
[1] "pcaMethods BPCA imputation - in progress"
[1] "pcaMethods NIPALS imputation - in progress"
[1] "pcaMethods NLPCA imputation - in progress"
[1] "mice mixed imputation - in progress"
[1] "mi imputation - in progress"
starting worker pid=76816 on localhost:11980 at 18:25:52.143
starting worker pid=27392 on localhost:11980 at 18:25:52.159
Error in unserialize(node$con) : error reading from connection
Calls: <Anonymous> -> workLoop -> makeSOCKmaster
Execution halted
Error in unserialize(node$con) : error reading from connection
Calls: <Anonymous> -> workLoop -> makeSOCKmaster
Execution halted
Saving _problems/test.imp_data-40.R
[1] "Median imputation - in progress"
[1] "Mean imputation - in progress"
[1] "missMDA regularized imputation - in progress"
[1] "missMDA EM imputation - in progress"
[1] "pcaMethods svdImpute imputation - in progress"
[1] "pcaMethods BPCA imputation - in progress"
[1] "pcaMethods NIPALS imputation - in progress"
[1] "VIM kNN imputation - in progress"
[1] "random replacement imputation - in progress"
[1] "ITERATION 1 OF TOTAL 1 - IN PROGRESS"
[1] "random replacement imputation - in progress"
[1] "Median imputation - in progress"
[1] "Mean imputation - in progress"
[1] "missMDA regularized imputation - in progress"
[1] "missMDA EM imputation - in progress"
[1] "pcaMethods PPCA imputation - in progress"
[1] "pcaMethods svdImpute imputation - in progress"
[1] "pcaMethods BPCA imputation - in progress"
[1] "pcaMethods NIPALS imputation - in progress"
[1] "pcaMethods NLPCA imputation - in progress"
[1] "mice mixed imputation - in progress"
[1] "mi imputation - in progress"
starting worker pid=16624 on localhost:11980 at 18:30:10.740
starting worker pid=80416 on localhost:11980 at 18:30:10.741
Error in unserialize(node$con) : error reading from connection
Calls: <Anonymous> -> workLoop -> makeSOCKmaster
Execution halted
Error in unserialize(node$con) : error reading from connection
Calls: <Anonymous> -> workLoop -> makeSOCKmaster
Execution halted
Saving _problems/test.imp_simulation-23.R
[ FAIL 5 | WARN 1 | SKIP 0 | PASS 31 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test.imp_data.R:22:3'): factors OK scaling runs OK ────────────────
`impute_data(...)` threw an error.
Message: Cluster setup failed. 2 of 2 workers failed to connect.
Class: simpleError/error/condition
Backtrace:
▆
1. ├─testthat::expect_error(...) at test.imp_data.R:22:3
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─missCompare::impute_data(...)
7. ├─utils::capture.output(...)
8. │ └─base::withVisible(...elt(i))
9. ├─mi::mi(as.data.frame(X), n.chain = 1, n.iter = 100, verbose = FALSE)
10. └─mi::mi(as.data.frame(X), n.chain = 1, n.iter = 100, verbose = FALSE)
11. └─mi (local) .local(y, ...)
12. ├─mi::mi(...)
13. └─mi::mi(...)
14. └─mi (local) .local(y, ...)
15. └─parallel::makeCluster(cores, outfile = "")
16. └─parallel::makePSOCKcluster(names = spec, ...)
── Failure ('test.imp_data.R:28:3'): factors OK no scaling runs OK ─────────────
`impute_data(...)` threw an error.
Message: Cluster setup failed. 2 of 2 workers failed to connect.
Class: simpleError/error/condition
Backtrace:
▆
1. ├─testthat::expect_error(...) at test.imp_data.R:28:3
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─missCompare::impute_data(...)
7. ├─utils::capture.output(...)
8. │ └─base::withVisible(...elt(i))
9. ├─mi::mi(as.data.frame(X), n.chain = 1, n.iter = 100, verbose = FALSE)
10. └─mi::mi(as.data.frame(X), n.chain = 1, n.iter = 100, verbose = FALSE)
11. └─mi (local) .local(y, ...)
12. ├─mi::mi(...)
13. └─mi::mi(...)
14. └─mi (local) .local(y, ...)
15. └─parallel::makeCluster(cores, outfile = "")
16. └─parallel::makePSOCKcluster(names = spec, ...)
── Failure ('test.imp_data.R:34:3'): runs OK when all numeric and with scaling ──
`impute_data(small, n.iter = 1, scale = T, sel_method = c(1:16))` threw an error.
Message: Cluster setup failed. 2 of 2 workers failed to connect.
Class: simpleError/error/condition
Backtrace:
▆
1. ├─testthat::expect_error(...) at test.imp_data.R:34:3
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─missCompare::impute_data(small, n.iter = 1, scale = T, sel_method = c(1:16))
7. ├─utils::capture.output(...)
8. │ └─base::withVisible(...elt(i))
9. ├─mi::mi(as.data.frame(X), n.chain = 1, n.iter = 100, verbose = FALSE)
10. └─mi::mi(as.data.frame(X), n.chain = 1, n.iter = 100, verbose = FALSE)
11. └─mi (local) .local(y, ...)
12. ├─mi::mi(...)
13. └─mi::mi(...)
14. └─mi (local) .local(y, ...)
15. └─parallel::makeCluster(cores, outfile = "")
16. └─parallel::makePSOCKcluster(names = spec, ...)
── Failure ('test.imp_data.R:40:3'): runs OK when all numeric and without scaling ──
`suppressWarnings(impute_data(small, n.iter = 1, scale = F, sel_method = c(1:16)))` threw an error.
Message: Cluster setup failed. 2 of 2 workers failed to connect.
Class: simpleError/error/condition
Backtrace:
▆
1. ├─testthat::expect_error(...) at test.imp_data.R:40:3
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. ├─base::suppressWarnings(...)
7. │ └─base::withCallingHandlers(...)
8. └─missCompare::impute_data(small, n.iter = 1, scale = F, sel_method = c(1:16))
9. ├─utils::capture.output(...)
10. │ └─base::withVisible(...elt(i))
11. ├─mi::mi(as.data.frame(X), n.chain = 1, n.iter = 100, verbose = FALSE)
12. └─mi::mi(as.data.frame(X), n.chain = 1, n.iter = 100, verbose = FALSE)
13. └─mi (local) .local(y, ...)
14. ├─mi::mi(...)
15. └─mi::mi(...)
16. └─mi (local) .local(y, ...)
17. └─parallel::makeCluster(cores, outfile = "")
18. └─parallel::makePSOCKcluster(names = spec, ...)
── Failure ('test.imp_simulation.R:17:3'): simulation runs without errors ──────
`impute_simulated(...)` threw an error.
Message: Cluster setup failed. 2 of 2 workers failed to connect.
Class: simpleError/error/condition
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test.imp_simulation.R:17:3
2. │ └─base::withCallingHandlers(...)
3. ├─testthat::expect_error(...)
4. │ └─testthat:::quasi_capture(...)
5. │ ├─testthat (local) .capture(...)
6. │ │ └─base::withCallingHandlers(...)
7. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
8. └─missCompare::impute_simulated(...)
9. ├─base::as.data.frame(test_mi(sim$Simulated_matrix, list = res))
10. └─missCompare::test_mi(sim$Simulated_matrix, list = res)
11. ├─utils::capture.output(results <- lapply(list, mi_imp))
12. │ └─base::withVisible(...elt(i))
13. └─base::lapply(list, mi_imp)
14. └─missCompare (local) FUN(X[[i]], ...)
15. ├─mi::mi(as.data.frame(X), n.chain = 1, n.iter = 100, verbose = FALSE)
16. └─mi::mi(as.data.frame(X), n.chain = 1, n.iter = 100, verbose = FALSE)
17. └─mi (local) .local(y, ...)
18. ├─mi::mi(...)
19. └─mi::mi(...)
20. └─mi (local) .local(y, ...)
21. └─parallel::makeCluster(cores, outfile = "")
22. └─parallel::makePSOCKcluster(names = spec, ...)
[ FAIL 5 | WARN 1 | SKIP 0 | PASS 31 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-windows-x86_64