Last updated on 2025-12-19 12:49:03 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 3.3.4 | 98.66 | 319.52 | 418.18 | OK | |
| r-devel-linux-x86_64-debian-gcc | 3.3.4 | 77.84 | 207.19 | 285.03 | OK | |
| r-devel-linux-x86_64-fedora-clang | 3.3.4 | 163.00 | 451.01 | 614.01 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 3.3.4 | 187.00 | 430.77 | 617.77 | ERROR | |
| r-devel-windows-x86_64 | 3.3.4 | 108.00 | 190.00 | 298.00 | OK | --no-examples --no-tests --no-vignettes |
| r-patched-linux-x86_64 | 3.3.4 | 101.92 | 278.53 | 380.45 | OK | |
| r-release-linux-x86_64 | 3.3.4 | 105.27 | 277.26 | 382.53 | OK | |
| r-release-macos-arm64 | 3.3.4 | OK | ||||
| r-release-macos-x86_64 | 3.3.4 | 62.00 | 196.00 | 258.00 | OK | |
| r-release-windows-x86_64 | 3.3.4 | 107.00 | 156.00 | 263.00 | OK | --no-examples --no-tests --no-vignettes |
| r-oldrel-macos-arm64 | 3.3.4 | NOTE | ||||
| r-oldrel-macos-x86_64 | 3.3.4 | 59.00 | 249.00 | 308.00 | NOTE | |
| r-oldrel-windows-x86_64 | 3.3.4 | 135.00 | 157.00 | 292.00 | OK | --no-examples --no-tests --no-vignettes |
Version: 3.3.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [136s/126s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> ## * load packages
> library(testthat)
> library(BuyseTest)
Loading required package: Rcpp
BuyseTest version 3.3.4
>
> library(lava)
Attaching package: 'lava'
The following object is masked from 'package:testthat':
compare
> library(data.table)
Attaching package: 'data.table'
The following object is masked from 'package:base':
%notin%
> library(survival)
Attaching package: 'survival'
The following object is masked from 'package:BuyseTest':
brier
> xx <- capture.output(print(veteran))
> library(riskRegression)
riskRegression version 2025.09.17
> library(prodlim)
> library(mvtnorm)
>
> ## * run tests
> ## setwd("~/Documents/GitHub/BuyseTest/tests/")
> ## source("~/Documents/GitHub/BuyseTest/tests/testthat/test-BuyseTest-engine.R")
> test_check("BuyseTest")
Saving _problems/test-BuysePower-92.R
Saving _problems/test-BuysePower-132.R
Saving _problems/test-BuysePower-174.R
Saving _problems/test-BuyseTTEM-34.R
Saving _problems/test-BuyseTest-standardization-184.R
Saving _problems/test-BuyseTest-standardization-212.R
[ FAIL 6 | WARN 0 | SKIP 2 | PASS 1157 ]
══ Skipped tests (2) ═══════════════════════════════════════════════════════════
• empty test (2): 'test-BuyseTest-previousBug.R:554:1',
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-BuysePower.R:92:9'): 1 tte endpoint - Gehan ────────────────────
Error in ``[.data.table`(d, , `:=`(id, 1:.N), by = "treatment")`: attempt access index 5/5 in VECTOR_ELT
Backtrace:
▆
1. ├─d[, `:=`(id, 1:.N), by = "treatment"] at test-BuysePower.R:92:9
2. └─data.table:::`[.data.table`(d, , `:=`(id, 1:.N), by = "treatment") at test-BuysePower.R:92:9
── Error ('test-BuysePower.R:132:9'): 1 tte endpoint - Peron ───────────────────
Error in ``[.data.table`(d, , `:=`(id, 1:.N), by = "treatment")`: attempt access index 5/5 in VECTOR_ELT
Backtrace:
▆
1. ├─d[, `:=`(id, 1:.N), by = "treatment"] at test-BuysePower.R:132:9
2. └─data.table:::`[.data.table`(d, , `:=`(id, 1:.N), by = "treatment") at test-BuysePower.R:132:9
── Error ('test-BuysePower.R:174:9'): Multiple endpoints ───────────────────────
Error in ``[.data.table`(d, , `:=`(id, 1:.N), by = "treatment")`: attempt access index 5/5 in VECTOR_ELT
Backtrace:
▆
1. ├─d[, `:=`(id, 1:.N), by = "treatment"] at test-BuysePower.R:174:9
2. └─data.table:::`[.data.table`(d, , `:=`(id, 1:.N), by = "treatment") at test-BuysePower.R:174:9
── Error ('test-BuyseTTEM.R:34:1'): (code run outside of `test_that()`) ────────
Error in ``[.data.table`(dt, , `:=`(last, eventtime == max(eventtime)), by = c("treatment", "toxicity"))`: attempt access index 6/6 in VECTOR_ELT
Backtrace:
▆
1. ├─...[] at test-BuyseTTEM.R:34:1
2. └─data.table:::`[.data.table`(...) at test-BuyseTTEM.R:34:1
── Error ('test-BuyseTest-standardization.R:184:5'): BuyseTest - standarization (second order, binary outcome, balanced) ──
Error in ``[.data.table`(mytable, , `:=`(m.X, length(unique(index.0))), by = "strata")`: attempt access index 9/9 in VECTOR_ELT
Backtrace:
▆
1. ├─mytable[, `:=`(m.X, length(unique(index.0))), by = "strata"] at test-BuyseTest-standardization.R:184:5
2. └─data.table:::`[.data.table`(...) at test-BuyseTest-standardization.R:184:5
── Error ('test-BuyseTest-standardization.R:212:5'): BuyseTest - standarization (second order, binary outcome, unbalanced) ──
Error in ``[.data.table`(mytableUB, , `:=`(m.X, length(unique(index.0))), by = "strata")`: attempt access index 9/9 in VECTOR_ELT
Backtrace:
▆
1. ├─mytableUB[, `:=`(m.X, length(unique(index.0))), by = "strata"] at test-BuyseTest-standardization.R:212:5
2. └─data.table:::`[.data.table`(...) at test-BuyseTest-standardization.R:212:5
[ FAIL 6 | WARN 0 | SKIP 2 | PASS 1157 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 3.3.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [120s/142s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> ## * load packages
> library(testthat)
> library(BuyseTest)
Loading required package: Rcpp
BuyseTest version 3.3.4
>
> library(lava)
Attaching package: 'lava'
The following object is masked from 'package:testthat':
compare
> library(data.table)
Attaching package: 'data.table'
The following object is masked from 'package:base':
%notin%
> library(survival)
Attaching package: 'survival'
The following object is masked from 'package:BuyseTest':
brier
> xx <- capture.output(print(veteran))
> library(riskRegression)
riskRegression version 2025.09.17
> library(prodlim)
> library(mvtnorm)
>
> ## * run tests
> ## setwd("~/Documents/GitHub/BuyseTest/tests/")
> ## source("~/Documents/GitHub/BuyseTest/tests/testthat/test-BuyseTest-engine.R")
> test_check("BuyseTest")
Saving _problems/test-BuysePower-92.R
Saving _problems/test-BuysePower-132.R
Saving _problems/test-BuysePower-174.R
Saving _problems/test-BuyseTTEM-34.R
Saving _problems/test-BuyseTest-standardization-184.R
Saving _problems/test-BuyseTest-standardization-212.R
[ FAIL 6 | WARN 0 | SKIP 2 | PASS 1157 ]
══ Skipped tests (2) ═══════════════════════════════════════════════════════════
• empty test (2): 'test-BuyseTest-previousBug.R:554:1',
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-BuysePower.R:92:9'): 1 tte endpoint - Gehan ────────────────────
Error in ``[.data.table`(d, , `:=`(id, 1:.N), by = "treatment")`: attempt access index 5/5 in VECTOR_ELT
Backtrace:
▆
1. ├─d[, `:=`(id, 1:.N), by = "treatment"] at test-BuysePower.R:92:9
2. └─data.table:::`[.data.table`(d, , `:=`(id, 1:.N), by = "treatment") at test-BuysePower.R:92:9
── Error ('test-BuysePower.R:132:9'): 1 tte endpoint - Peron ───────────────────
Error in ``[.data.table`(d, , `:=`(id, 1:.N), by = "treatment")`: attempt access index 5/5 in VECTOR_ELT
Backtrace:
▆
1. ├─d[, `:=`(id, 1:.N), by = "treatment"] at test-BuysePower.R:132:9
2. └─data.table:::`[.data.table`(d, , `:=`(id, 1:.N), by = "treatment") at test-BuysePower.R:132:9
── Error ('test-BuysePower.R:174:9'): Multiple endpoints ───────────────────────
Error in ``[.data.table`(d, , `:=`(id, 1:.N), by = "treatment")`: attempt access index 5/5 in VECTOR_ELT
Backtrace:
▆
1. ├─d[, `:=`(id, 1:.N), by = "treatment"] at test-BuysePower.R:174:9
2. └─data.table:::`[.data.table`(d, , `:=`(id, 1:.N), by = "treatment") at test-BuysePower.R:174:9
── Error ('test-BuyseTTEM.R:34:1'): (code run outside of `test_that()`) ────────
Error in ``[.data.table`(dt, , `:=`(last, eventtime == max(eventtime)), by = c("treatment", "toxicity"))`: attempt access index 6/6 in VECTOR_ELT
Backtrace:
▆
1. ├─...[] at test-BuyseTTEM.R:34:1
2. └─data.table:::`[.data.table`(...) at test-BuyseTTEM.R:34:1
── Error ('test-BuyseTest-standardization.R:184:5'): BuyseTest - standarization (second order, binary outcome, balanced) ──
Error in ``[.data.table`(mytable, , `:=`(m.X, length(unique(index.0))), by = "strata")`: attempt access index 9/9 in VECTOR_ELT
Backtrace:
▆
1. ├─mytable[, `:=`(m.X, length(unique(index.0))), by = "strata"] at test-BuyseTest-standardization.R:184:5
2. └─data.table:::`[.data.table`(...) at test-BuyseTest-standardization.R:184:5
── Error ('test-BuyseTest-standardization.R:212:5'): BuyseTest - standarization (second order, binary outcome, unbalanced) ──
Error in ``[.data.table`(mytableUB, , `:=`(m.X, length(unique(index.0))), by = "strata")`: attempt access index 9/9 in VECTOR_ELT
Backtrace:
▆
1. ├─mytableUB[, `:=`(m.X, length(unique(index.0))), by = "strata"] at test-BuyseTest-standardization.R:212:5
2. └─data.table:::`[.data.table`(...) at test-BuyseTest-standardization.R:212:5
[ FAIL 6 | WARN 0 | SKIP 2 | PASS 1157 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 3.3.4
Check: installed package size
Result: NOTE
installed size is 10.3Mb
sub-directories of 1Mb or more:
libs 7.2Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64