Dynamic Structural Equation Models

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Documentation for package ‘dsem’ version 2.0.0

• DESCRIPTION file
• User guides, package vignettes and other documentation
• Package NEWS
• Package README

Help Pages

as_fitted_DAG	Convert output from package dsem to phylopath
as_sem	Convert dsem to sem output
bering_sea	Bering Sea marine ecosystem
cAIC	Calculate conditional AIC
classify_variables	Classify variables path
convert_equations	Convert equations notation
dsem	Fit dynamic structural equation model
dsemRTMB	Fit dynamic structural equation model
dsem_control	Detailed control for dsem structure
hare_lynx	Lynx-Hare dynamics
isle_royale	Isle Royale wolf and moose
lake_washington	Lake washington plankton
list_parameters	List fixed and random effects
logLik.dsem	Marginal log-likelihood
loo_residuals	Calculate leave-one-out residuals
make_dfa	Make text for dynamic factor analysis
make_dsem_ram	Make a RAM (Reticular Action Model)
make_matrices	Make path matrices
paramesium_didinium	Paramesium-Didinium dynamics
parse_path	Parse path
partition_variance	Partition variance in one variable due to another (EXPERIMENTAL)
pdo_departure_bay	Pacific Decadal Oscillation and Departure Bay temperatures
plot.dsem	Simulate dsem
predict.dsem	predictions using dsem
print.dsem	Print fitted dsem object
read_model	Make a RAM (Reticular Action Model)
residuals.dsem	Calculate residuals
rk4sys	Classical Runge-Kutta for system of equations
sea_otter	Sea otter trophic cascade
simulate.dsem	Simulate dsem
stepwise_selection	Simulate dsem
summary.dsem	summarize dsem
test_dsep	Test d-separation
TMBAIC	Calculate marginal AIC for a fitted model
total_effect	Calculate total effects
vcov.dsem	Extract Variance-Covariance Matrix