mrcImageModelCreate
Usage
Usage: mrcImageModelCreate
Options:
[-o[utput] Out (NULL )] :Essential :OutputDataFile
[-i[nput] In (NULL )] :Optional :InputDataFile
[-nx nx (70 )] :Optional :Real length = nx * lx
[-ny ny (70 )] :Optional :Real length = ny * ly
[-nz nz (100 )] :Optional :Real lenght = nz * lz
[-r r (1 )] :Optional :Radius[pixel]
[-lx lx (5.0 )] :Optional :Pixel Size[Angstrom]
[-ly ly (5.0 )] :Optional :Pixel Size[Angstrom]
[-lz lz (5.0 )] :Optional :Pixel Size[Angstrom]
[-radius radius (150 )] :Optional :filament radius [A]
[-n nHelix (3 )] :Optional :n-helix
[-dz zPitch (143 )] :Optional :pitch [A]
[-dphi deltaPhi (40 )] :Optional :rotation angle [degree]
[-phi phiAngle (120 )] :Optional :rotation angle in the same level [degree]
[-sz startZ (0 )] :Optional :start z [A]
[-ez endZ (500 )] :Optional :end z [A]
[-sphi startPhi (0 )] :Optional :start angle [degree]
[-sphi2 startPhi2 (40 )] :Optional :start angle 2 [degree]
[-inMode inMode (0 )] :Optional :inMode
[-units units (9 )] :Optional :units number
[-fm fm (0 )] :Optional :formation
[-c[onfig] configFile (NULL )] :Optional :ConfigurationFile
[-m[ode] mode (0 )] :Optional :Mode
>>>> Mode <<<< (-m)
0: Circle(a right cylinder:3D) and Triangle(a trigonal prism:3D)
Optional argument : -nx -ny -nz -r
1: Thick Filaments
Example
Optional argument
-nx -ny -nz Image Size
-lx -ly -lz Pixel Size
-radius filament radius 150[A]
-n three helix
-dz pitch 143[A]
-dphi rotation angle 40[degree]
-phi rotation angle in the same level 120[degree]
-sz start z 0[A]
-ez end z 800[A]
-sphi start phi 0[degree]
-----------------------
-inMode Centre = 0
-inMode Origin = 1
-----------------------
-units 9
-fm formation of Gauss Sphere (t=1, u=9 and n=3)
0: normal
1: 3 sphere on the same z
Phi 0 , 30 , 60 degree
2: 3 sphere on the differnt z and on the differnt radius
Phi 0 , 30 , 60 degree
Z 0 , 30 , 60 A
Radius 0 ,1.2 ,1.4 times
3: 3 sphere on the same z and on the different radius
Phi 0 , 30 , 60 degree
Z 0 , 0 , 0 A
Radius 0 ,1.2 ,1.4 times
-----------------------
-units 3
-fm formation of Gauss Sphere (t=1, u=3 and n=3)
0: abnormal
2: Dot(2D)
3: Projection of 2 Sphere and 2 circle for 2D
Optional argument : -nx -ny
4: Another Projection of 2 Sphere and 2 circle for 2D
Optional argument : -nx -ny
5: Another Projection of 2 Sphere for 2D
Optional argument : -nx -ny