# filelist

dirname: /usr/src/debug/ncbi-blast-2.14.0-2.oe2403sp1.riscv64/c++/src/objects/coords
filetypes: fffffff
filenames:
  HGVS_Coordinate.cpp/HGVS_Coordinate_.cpp/HGVS_Coordinate_Set.cpp/HGVS_Coordinate_Set_.cpp/NCBI_HGVSCoordinate_module.cpp/objcoords__.cpp/objcoords___.cpp


dirname: /usr/src/debug/ncbi-blast-2.14.0-2.oe2403sp1.riscv64/c++/src/objects/seqcode
filetypes: ffffffffff
filenames:
  NCBI_SeqCode_module.cpp/Seq_code_set.cpp/Seq_code_set_.cpp/Seq_code_table.cpp/Seq_code_table_.cpp/Seq_code_type_.cpp/Seq_map_table.cpp/Seq_map_table_.cpp/seqcode__.cpp/seqcode___.cpp


dirname: /usr/src/debug/ncbi-blast-2.14.0-2.oe2403sp1.riscv64/c++/src/algo/blast/api
filetypes: fffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffff
filenames:
  bioseq_extract_data_priv.cpp/bioseq_extract_data_priv.hpp/bl2seq.cpp/blast_advprot_options.cpp/blast_aux.cpp/blast_aux_priv.cpp/blast_aux_priv.hpp/blast_dbindex.cpp/blast_memento_priv.hpp/blast_mtlock.cpp/blast_node.cpp/blast_nucl_options.cpp/blast_objmgr_priv.hpp/blast_objmgr_tools.cpp/blast_options_builder.cpp/blast_options_cxx.cpp/blast_options_handle.cpp/blast_options_local_priv.cpp/blast_options_local_priv.hpp/blast_prot_options.cpp/blast_results.cpp/blast_rps_options.cpp/blast_seqalign.cpp/blast_seqalign.hpp/blast_seqinfosrc_aux.cpp/blast_setup.hpp/blast_setup_cxx.cpp/blast_usage_report.cpp/blastp_kmer_options.cpp/blastx_options.cpp/cdd_pssm_input.cpp/deltablast.cpp/deltablast_options.cpp/disc_nucl_options.cpp/dust_filter.cpp/dust_filter.hpp/effsearchspace_calc.cpp/local_blast.cpp/local_db_adapter.cpp/local_search.cpp/magicblast.cpp/magicblast_options.cpp/msa_pssm_input.cpp/objmgr_query_data.cpp/objmgrfree_query_data.cpp/phiblast_nucl_options.cpp/phiblast_prot_options.cpp/prelim_search_runner.hpp/prelim_stage.cpp/psi_pssm_input.cpp/psibl2seq.cpp/psiblast.cpp/psiblast_aux_priv.cpp/psiblast_aux_priv.hpp/psiblast_impl.cpp/psiblast_impl.hpp/psiblast_iteration.cpp/psiblast_options.cpp/pssm_engine.cpp/query_data.cpp/remote_blast.cpp/remote_search.cpp/repeats_filter_cxx.cpp/rps_aux.cpp/rpsblast_local.cpp/rpstblastn_options.cpp/search_strategy.cpp/seedtop.cpp/seqinfosrc_bioseq.cpp/seqinfosrc_bioseq.hpp/seqinfosrc_seqdb.cpp/seqinfosrc_seqvec.cpp/seqsrc_multiseq.cpp/seqsrc_query_factory.cpp/seqsrc_query_factory.hpp/seqsrc_seqdb.cpp/setup_factory.cpp/split_query.hpp/split_query_aux_priv.cpp/split_query_aux_priv.hpp/split_query_blk.cpp/split_query_blk.hpp/split_query_cxx.cpp/subj_ranges_set.cpp/tblastn_options.cpp/tblastx_options.cpp/traceback_stage.cpp/uniform_search.cpp/version.cpp/winmask_filter.cpp/winmask_filter.hpp


dirname: /usr/src/debug/ncbi-blast-2.14.0-2.oe2403sp1.riscv64/c++/include/objtools/data_loaders/genbank/impl
filetypes: ffffffffffff
filenames:
  cache_manager.hpp/dispatcher.hpp/incr_time.hpp/info_cache.hpp/processor.hpp/processors.hpp/reader_id1_base.hpp/reader_id2_base.hpp/reader_service.hpp/request_result.hpp/statistics.hpp/wgsmaster.hpp


dirname: /usr/src/debug/ncbi-blast-2.14.0-2.oe2403sp1.riscv64/c++/src/algo/blast/proteinkmer
filetypes: fffffffff
filenames:
  blastkmer.cpp/blastkmerindex.cpp/blastkmeroptions.cpp/blastkmerresults.cpp/blastkmerutils.cpp/kblastapi.cpp/mhfile.cpp/pearson.cpp/pearson.hpp


dirname: /usr/src/debug/ncbi-blast-2.14.0-2.oe2403sp1.riscv64/c++/src/algo/blast/blastinput
filetypes: fffffffffffffffffffff
filenames:
  blast_args.cpp/blast_asn1_input.cpp/blast_fasta_input.cpp/blast_input.cpp/blast_input_aux.cpp/blast_scope_src.cpp/blastn_args.cpp/blastp_args.cpp/blastx_args.cpp/cmdline_flags.cpp/deltablast_args.cpp/igblastn_args.cpp/igblastp_args.cpp/kblastp_args.cpp/magicblast_args.cpp/psiblast_args.cpp/rmblastn_args.cpp/rpsblast_args.cpp/rpstblastn_args.cpp/tblastn_args.cpp/tblastx_args.cpp


dirname: /usr/src/debug/ncbi-blast-2.14.0-2.oe2403sp1.riscv64/c++/src/objects/seqalign
filetypes: fffffffffffffffffffffffffffffffffffff
filenames:
  Dense_diag.cpp/Dense_diag_.cpp/Dense_seg.cpp/Dense_seg_.cpp/NCBI_Seqalign_module.cpp/Packed_seg.cpp/Packed_seg_.cpp/Product_pos.cpp/Product_pos_.cpp/Prot_pos.cpp/Prot_pos_.cpp/Score.cpp/Score_.cpp/Score_set.cpp/Score_set_.cpp/Seq_align.cpp/Seq_align_.cpp/Seq_align_set.cpp/Seq_align_set_.cpp/Sparse_align.cpp/Sparse_align_.cpp/Sparse_seg.cpp/Sparse_seg_.cpp/Sparse_seg_ext.cpp/Sparse_seg_ext_.cpp/Splice_site.cpp/Splice_site_.cpp/Spliced_exon.cpp/Spliced_exon_.cpp/Spliced_exon_chunk.cpp/Spliced_exon_chunk_.cpp/Spliced_seg.cpp/Spliced_seg_.cpp/Spliced_seg_modifier.cpp/Spliced_seg_modifier_.cpp/Std_seg.cpp/Std_seg_.cpp


dirname: /usr/src/debug/ncbi-blast-2.14.0-2.oe2403sp1.riscv64/c++/src/objects/mmdb3
filetypes: fffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffff
filenames:
  Align_stats.cpp/Align_stats_.cpp/Atom_pntrs.cpp/Atom_pntrs_.cpp/Biostruc_feature.cpp/Biostruc_feature_.cpp/Biostruc_feature_id_.cpp/Biostruc_feature_set.cpp/Biostruc_feature_set_.cpp/Biostruc_feature_set_descr.cpp/Biostruc_feature_set_descr_.cpp/Biostruc_feature_set_id_.cpp/Biostruc_molecule_pntr.cpp/Biostruc_molecule_pntr_.cpp/Biostruc_script.cpp/Biostruc_script_.cpp/Biostruc_script_step.cpp/Biostruc_script_step_.cpp/Brick.cpp/Brick_.cpp/Camera.cpp/Camera_.cpp/Chem_graph_alignment.cpp/Chem_graph_alignment_.cpp/Chem_graph_interaction.cpp/Chem_graph_interaction_.cpp/Chem_graph_pntrs.cpp/Chem_graph_pntrs_.cpp/Color_prop.cpp/Color_prop_.cpp/Cone.cpp/Cone_.cpp/Cylinder.cpp/Cylinder_.cpp/GL_matrix.cpp/GL_matrix_.cpp/MMDB_Features_module.cpp/Model_space_point.cpp/Model_space_point_.cpp/Molecule_pntrs.cpp/Molecule_pntrs_.cpp/Move.cpp/Move_.cpp/Other_feature.cpp/Other_feature_.cpp/RealValue.cpp/RealValue_.cpp/Region_boundary.cpp/Region_boundary_.cpp/Region_coordinates.cpp/Region_coordinates_.cpp/Region_pntrs.cpp/Region_pntrs_.cpp/Region_similarity.cpp/Region_similarity_.cpp/Render_prop_.cpp/Residue_explicit_pntrs.cpp/Residue_explicit_pntrs_.cpp/Residue_interval_pntr.cpp/Residue_interval_pntr_.cpp/Residue_pntrs.cpp/Residue_pntrs_.cpp/Rot_matrix.cpp/Rot_matrix_.cpp/Sphere.cpp/Sphere_.cpp/Step_id_.cpp/Trans_matrix.cpp/Trans_matrix_.cpp/Transform.cpp/Transform_.cpp


dirname: /usr/src/debug/ncbi-blast-2.14.0-2.oe2403sp1.riscv64/c++/include/objects/submit
filetypes: ffffff
filenames:
  Contact_info.hpp/Contact_info_.hpp/Seq_submit.hpp/Seq_submit_.hpp/Submit_block.hpp/Submit_block_.hpp


dirname: /usr/src/debug/ncbi-blast-2.14.0-2.oe2403sp1.riscv64/c++/src/objtools/eutils/egquery
filetypes: fffffffff
filenames:
  EGQueryResult.cpp/EGQueryResult_.cpp/Result.cpp/ResultItem.cpp/ResultItem_.cpp/Result_.cpp/egquery__.cpp/egquery___.cpp/egquery_module.cpp


dirname: /usr/src/debug/ncbi-blast-2.14.0-2.oe2403sp1.riscv64/c++/include/objects/varrep
filetypes: ffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffff
filenames:
  AaInterval.hpp/AaInterval_.hpp/AaLocation.hpp/AaLocation_.hpp/AaSite.hpp/AaSiteRange.hpp/AaSiteRange_.hpp/AaSite_.hpp/Conversion.hpp/Conversion_.hpp/Count.hpp/Count_.hpp/CtermExtension.hpp/CtermExtension_.hpp/Deletion.hpp/Deletion_.hpp/Delins.hpp/Delins_.hpp/Duplication.hpp/Duplication_.hpp/Frameshift.hpp/Frameshift_.hpp/Insertion.hpp/Insertion_.hpp/Inversion.hpp/Inversion_.hpp/NaIdentity.hpp/NaIdentity_.hpp/NaSub.hpp/NaSub_.hpp/NtIntLimit.hpp/NtIntLimit_.hpp/NtInterval.hpp/NtInterval_.hpp/NtLocation.hpp/NtLocation_.hpp/NtSite.hpp/NtSiteRange.hpp/NtSiteRange_.hpp/NtSite_.hpp/NtermExtension.hpp/NtermExtension_.hpp/ProteinExtension.hpp/ProteinExtension_.hpp/ProteinSub.hpp/ProteinSub_.hpp/Repeat.hpp/Repeat_.hpp/SeqInterval.hpp/SeqInterval_.hpp/SeqLocation.hpp/SeqLocation_.hpp/SequenceVariant.hpp/SequenceVariant_.hpp/SimpleVariant.hpp/SimpleVariantSeq.hpp/SimpleVariantSeq_.hpp/SimpleVariant_.hpp/SpecialVariant_.hpp/Subsequence.hpp/Subsequence_.hpp/Variant.hpp/VariantExpression.hpp/VariantExpression_.hpp/VariantSeqType_.hpp/Variant_.hpp


dirname: /usr/src/debug/ncbi-blast-2.14.0-2.oe2403sp1.riscv64/c++/include/objmgr/util
filetypes: fffffffffffffffff
filenames:
  autodef.hpp/autodef_available_modifier.hpp/autodef_feature_clause.hpp/autodef_feature_clause_base.hpp/autodef_mod_combo.hpp/autodef_options.hpp/autodef_source_desc.hpp/autodef_source_group.hpp/create_defline.hpp/feature.hpp/feature_edit.hpp/indexer.hpp/obj_sniff.hpp/objutil.hpp/seq_loc_util.hpp/sequence.hpp/weight.hpp


dirname: /usr/src/debug/ncbi-blast-2.14.0-2.oe2403sp1.riscv64/c++/include/objtools/blast/seqdb_writer
filetypes: fdfffffffff
filenames:
  build_db.hpp/impl/multisource_util.hpp/taxid_set.hpp/writedb.hpp/writedb_convert.hpp/writedb_error.hpp/writedb_files.hpp/writedb_general.hpp/writedb_isam.hpp/writedb_lmdb.hpp


dirname: /usr/src/debug/ncbi-blast-2.14.0-2.oe2403sp1.riscv64/c++/include/objmgr/impl
filetypes: fffffffffffffffffffffffffffffffffffffffffffff
filenames:
  annot_collector.hpp/annot_finder.hpp/annot_object.hpp/annot_object_index.hpp/annot_type_index.hpp/bioseq_base_info.hpp/bioseq_edit_commands.hpp/bioseq_info.hpp/bioseq_set_edit_commands.hpp/bioseq_set_info.hpp/data_source.hpp/edit_commands_impl.hpp/handle_range.hpp/handle_range_map.hpp/heap_scope.hpp/prefetch_impl.hpp/prefetch_manager_impl.hpp/priority.hpp/scope_impl.hpp/scope_info.hpp/scope_transaction_impl.hpp/seq_align_mapper.hpp/seq_annot_edit_commands.hpp/seq_annot_info.hpp/seq_entry_edit_commands.hpp/seq_entry_info.hpp/seq_id_sort.hpp/seq_loc_cvt.hpp/seq_table_info.hpp/seq_table_setter.hpp/seq_table_setters.hpp/seq_vector_cvt.hpp/seq_vector_cvt_gen.hpp/snp_annot_info.hpp/snp_info.hpp/split_parser.hpp/synonyms.hpp/tse_assigner.hpp/tse_chunk_info.hpp/tse_info.hpp/tse_info_object.hpp/tse_loadlock.hpp/tse_lock.hpp/tse_scope_lock.hpp/tse_split_info.hpp


dirname: /usr/src/debug/ncbi-blast-2.14.0-2.oe2403sp1.riscv64/c++/include/objects/biblio
filetypes: ffffffffffffffffffffffffffffffffffffffffffffffffffffffffff
filenames:
  Affil.hpp/Affil_.hpp/ArticleId.hpp/ArticleIdSet.hpp/ArticleIdSet_.hpp/ArticleId_.hpp/Auth_list.hpp/Auth_list_.hpp/Author.hpp/Author_.hpp/CitRetract.hpp/CitRetract_.hpp/Cit_art.hpp/Cit_art_.hpp/Cit_book.hpp/Cit_book_.hpp/Cit_gen.hpp/Cit_gen_.hpp/Cit_jour.hpp/Cit_jour_.hpp/Cit_let.hpp/Cit_let_.hpp/Cit_pat.hpp/Cit_pat_.hpp/Cit_proc.hpp/Cit_proc_.hpp/Cit_sub.hpp/Cit_sub_.hpp/DOI.hpp/DOI_.hpp/Id_pat.hpp/Id_pat_.hpp/Imprint.hpp/Imprint_.hpp/MedlineUID.hpp/MedlineUID_.hpp/Meeting.hpp/Meeting_.hpp/PII.hpp/PII_.hpp/Patent_priority.hpp/Patent_priority_.hpp/PmPid.hpp/PmPid_.hpp/PmcID.hpp/PmcID_.hpp/PmcPid.hpp/PmcPid_.hpp/PubMedId.hpp/PubMedId_.hpp/PubStatusDate.hpp/PubStatusDateSet.hpp/PubStatusDateSet_.hpp/PubStatusDate_.hpp/PubStatus_.hpp/Title.hpp/Title_.hpp/citation_base.hpp


dirname: /usr/src/debug/ncbi-blast-2.14.0-2.oe2403sp1.riscv64/c++/src/objects/scoremat
filetypes: fffffffffffffffffffffffffff
filenames:
  BlockProperty.cpp/BlockProperty_.cpp/CoreBlock.cpp/CoreBlock_.cpp/CoreDef.cpp/CoreDef_.cpp/FormatRpsDbParameters.cpp/FormatRpsDbParameters_.cpp/LoopConstraint.cpp/LoopConstraint_.cpp/NCBI_ScoreMat_module.cpp/Pssm.cpp/PssmFinalData.cpp/PssmFinalData_.cpp/PssmIntermediateData.cpp/PssmIntermediateData_.cpp/PssmParameters.cpp/PssmParameters_.cpp/PssmWithParameters.cpp/PssmWithParameters_.cpp/Pssm_.cpp/Site_annot.cpp/Site_annot_.cpp/Site_annot_set.cpp/Site_annot_set_.cpp/scoremat__.cpp/scoremat___.cpp


dirname: /usr/src/debug/ncbi-blast-2.14.0-2.oe2403sp1.riscv64/c++/include/objtools/eutils/api
filetypes: ffffffffff
filenames:
  efetch.hpp/egquery.hpp/ehistory.hpp/einfo.hpp/elink.hpp/epost.hpp/esearch.hpp/espell.hpp/esummary.hpp/eutils.hpp


dirname: /usr/src/debug/ncbi-blast-2.14.0-2.oe2403sp1.riscv64/c++/include/objmgr/split
filetypes: fffffffffffff
filenames:
  annot_piece.hpp/asn_sizer.hpp/blob_splitter.hpp/blob_splitter_impl.hpp/blob_splitter_params.hpp/chunk_info.hpp/id2_compress.hpp/id_range.hpp/object_splitinfo.hpp/place_id.hpp/size.hpp/split_blob.hpp/split_exceptions.hpp


dirname: /usr/src/debug/ncbi-blast-2.14.0-2.oe2403sp1.riscv64/c++/src/objects/variation
filetypes: fffffffffff
filenames:
  NCBI_VariationPackage_module.cpp/VariantPlacement.cpp/VariantPlacement_.cpp/Variation.cpp/VariationException.cpp/VariationException_.cpp/VariationMethod.cpp/VariationMethod_.cpp/Variation_.cpp/variation__.cpp/variation___.cpp


dirname: /usr/src/debug/ncbi-blast-2.14.0-2.oe2403sp1.riscv64/c++/include/corelib/impl
filetypes: fffffff
filenames:
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dirname: /usr/src/debug/ncbi-blast-2.14.0-2.oe2403sp1.riscv64/c++/include/algo/blast/format
filetypes: ffffffffff
filenames:
  blast_async_format.hpp/blast_format.hpp/blastfmtutil.hpp/blastxml2_format.hpp/blastxml_format.hpp/build_archive.hpp/data4xml2format.hpp/data4xmlformat.hpp/sam.hpp/vecscreen_run.hpp


dirname: /usr/src/debug/ncbi-blast-2.14.0-2.oe2403sp1.riscv64/c++/include/objects/genomecoll
filetypes: fffffffffffffffffffffffffffffffffffff
filenames:
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dirname: /usr/src/debug/ncbi-blast-2.14.0-2.oe2403sp1.riscv64/c++/include/objtools/data_loaders/genbank
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filenames:
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dirname: /usr/src/debug/ncbi-blast-2.14.0-2.oe2403sp1.riscv64/c++/src/objtools/eutils/einfo
filetypes: fffffffffffffffff
filenames:
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dirname: /usr/src/debug/ncbi-blast-2.14.0-2.oe2403sp1.riscv64/c++/src/objtools/eutils/efetch
filenames:
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filenames: EWIEGA46WW/include
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filenames: kio_msits_autogen
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filenames: moc_generator_fax.cpp
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filenames: okularGenerator_fb_autogen
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filenames: generator_kimgio.moc
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[cell repeats an earlier one in this file: 260 characters]


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[cell repeats an earlier one in this file: 114 characters]


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filenames: awsrulesfn/endpoints.go/v2
filetypes: dfd
dirname:
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dirname: /usr/src/debug/opentofu-1.6.2-1.oe2403sp1.riscv64/vendor/go.opencensus.io/stats/view
filetypes: ffffffff
filenames:
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filetypes: ffff
dirname:
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filenames:
[cell repeats an earlier one in this file: 134 characters]


filenames: openstack_stub.go
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dirname:
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filenames: overhead.go/runtimeclass.go/scheduling.go
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filenames: messageset.go
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filenames: debug.go/decode.go/encode.go/error.go/eventstreamapi/header.go/header_value.go/message.go
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dirname:
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filenames: config.go/endpoints.go/go_module_metadata.go
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filenames: retry.go
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filenames: build.go/queryutil/unmarshal.go/unmarshal_error.go
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filenames: tracetransform
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dirname:
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dirname: /usr/src/debug/opentofu-1.6.2-1.oe2403sp1.riscv64/vendor/github.com
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