## ----setup, include = FALSE--------------------------------------------------- knitr::opts_chunk$set( collapse = TRUE, comment = "#>" ) ## ----install, eval=FALSE------------------------------------------------------ # if (!requireNamespace("BiocManager", quietly = TRUE)) # install.packages("BiocManager") # BiocManager::install("BiocBaseUtils") ## ----load-package, include=TRUE, results="hide", message=FALSE, warning=FALSE---- library(BiocBaseUtils) ## ----assertions-logical------------------------------------------------------- isTRUEorFALSE(TRUE) isTRUEorFALSE(FALSE) isTRUEorFALSE(NA, na.ok = TRUE) ## ----assertions-character----------------------------------------------------- isScalarCharacter(LETTERS) isScalarCharacter("L") isCharacter(LETTERS) isCharacter(NA_character_, na.ok = TRUE) isZeroOneCharacter("") isZeroOneCharacter("", zchar = TRUE) ## ----assertions-numeric------------------------------------------------------- isScalarInteger(1L) isScalarInteger(1) isScalarNumber(1) isScalarNumber(1:2) ## ----setslots-class----------------------------------------------------------- setClass("A", representation = representation(slot1 = "numeric")) aclass <- new("A", slot1 = 1:10) aclass ## ----setslots-update---------------------------------------------------------- aclass <- setSlots(aclass, slot1 = 11:20) aclass ## ----selectsome-show---------------------------------------------------------- setMethod("show", signature = "A", function(object) { s1info <- getElement(object, "slot1") cat("A sequence:", selectSome(s1info)) }) aclass ## ----session-info------------------------------------------------------------- sessionInfo()