## ----setup, include = FALSE--------------------------------------------------- knitr::opts_chunk$set(collapse = TRUE, comment = "#>") # Skip evaluation of all chunks on CRAN's auto-check farm to fit the # 10-minute build budget. Locally, on CI, and under devtools::check(), # NOT_CRAN=true and all chunks evaluate normally. The vignette source # (which CRAN users see in browseVignettes() / vignette()) is unchanged. NOT_CRAN <- identical(tolower(Sys.getenv("NOT_CRAN")), "true") knitr::opts_chunk$set(eval = NOT_CRAN) ## ----load--------------------------------------------------------------------- # library(vennDiagramLab) # result <- analyze(load_sample("dataset_real_cancer_drivers_4")) # length(result@dataset@set_names) ## ----venn--------------------------------------------------------------------- # svg <- render_venn_svg(result, title = "4-set Venn (cancer drivers)") # nchar(svg) ## ----upset, eval = NOT_CRAN && (getRversion() >= "4.6")----------------------- # render_upset(result, sort_by = "size", color_mode = "depth") ## ----network, eval = NOT_CRAN------------------------------------------------- # render_network(result, edge_metric = "intersection")