--- title: "Parallel Bootstrapping with plssem" output: rmarkdown::html_vignette vignette: > %\VignetteIndexEntry{Parallel Bootstrapping with plssem} %\VignetteEngine{knitr::rmarkdown} \usepackage[utf8]{inputenc} --- ```{r setup, include=FALSE} knitr::opts_chunk$set( collapse = TRUE, comment = "#>" ) library(plssem) ``` This vignette shows how to run bootstrap standard errors in parallel using `boot.ncpus` and `boot.parallel`. ## Example model (ordered indicators) ```{r syntax} m <- ' X =~ x1 + x2 + x3 Z =~ z1 + z2 + z3 Y =~ y1 + y2 + y3 Y ~ X + Z + X:Z ' ``` ## Windows: PSOCK cluster (`boot.parallel = "snow"`) Use `"snow"` on Windows (PSOCK clusters; similar to a “multisession” approach). ```{r boot-windows, eval = FALSE} fit_win <- pls( m, data = oneIntOrdered, ordered = colnames(oneIntOrdered), bootstrap = TRUE, boot.R = 500, boot.ncpus = 2, boot.parallel = "snow", boot.iseed = 123 ) summary(fit_win) ``` ## Linux: forked processes (`boot.parallel = "multicore"`) Use `"multicore"` on Linux (forking; not available on Windows). ```{r boot-linux, eval = FALSE} fit_linux <- pls( m, data = oneIntOrdered, ordered = colnames(oneIntOrdered), bootstrap = TRUE, boot.R = 500, boot.ncpus = 2, boot.parallel = "multicore", boot.iseed = 123 ) summary(fit_linux) ```