fcc7390b4c77cdee551b040cd8168613 *DESCRIPTION
f284376760adbf5e6e0dc2f11d24ad4e *NAMESPACE
4f6d48ecae12781ecd097468cab23894 *R/RcppExports.R
ee5e5c6887007019860fc0c2d95955e3 *R/breakup_transition.R
16c14a7b80149c610dccbca8a2d2fa3b *R/build_scenario_table.R
c65af8d0d5bfd913cbd6c159cd5f4579 *R/constructModel.R
d7499326c25cf7529012ff19e61c31da *R/cv.pretrain.multivar.R
22795cfa54b0673031b4c66139dc9067 *R/cv.var.R
ecafe3fa814e7737c06bbdab5d04978c *R/cv_blocked.R
05aec0dd4626fca092adeb2be0c642a3 *R/cv_multivar.R
6b8aefd5d99814bacb0e3b63c42f9518 *R/cv_rolling.R
4ac2154aa51f5e9e6e7759f5e8c42dba *R/data.R
06cd8cf7762fd349213fb2b5638df7ba *R/est_base_weight_mat.R
33483530e010c0220fbc53ffe688fc19 *R/estimate_initial_coefs.R
4f7458125cd9e37a952d63d892275cda *R/eval_multivar_performance.R
52a246756426165564402bf920535c77 *R/extract_multivar_hyperparams.R
6dfeb300a77ad59d6454b090a7be8203 *R/extract_results.R
7d593db5ee90bf0233d5fd53e20702cb *R/fit_canonical_var.R
3113900589f99a793185736753b67e5e *R/get_subgroups.R
7212037284632ab7d53d771dff81ae8d *R/globals.R
ade6182155317e8df5297264e37d203f *R/helper_functions.R
ad918b23c00bb8c5cdebaa7aaff6e4e9 *R/imports.R
519b98d6420e79e4cc0937b0e0b263aa *R/lambda_grid.R
530dbc1ceff8d37dbabc877b9e005df6 *R/maity_debiasing.R
e601da6da9230f809924a4065f12b932 *R/matrix_spec.R
35f8476103791feca8a85abf9cdd55e6 *R/multivar-package.R
87fad4a855005dd94f9f1dcf073522fb *R/multivar.R
da91681e86ad588396aef456a934f150 *R/multivarObjectClass.R
8d94867c17881051b66449c82b925a47 *R/multivar_bdiag.R
9667eb7054f75f650e183f1e2b2c6f28 *R/multivar_sim.R
98b95a7abf4bac7f9aac677c28134738 *R/multivar_sim_breaks.R
edea57b554547489ca5d399847753a92 *R/multivar_sim_growth.R
9ba545a0e609b3a6bfe249eed92ea680 *R/multivar_sim_subgroups.R
ef604e8ae26739b18abd408a03e3e31b *R/multivar_sim_tvp.R
85f3f1cfce5e84d065252226714d0dbc *R/plot_cv_lambda_grid.R
41c4ac000ac32f9e2603c3176c448dd4 *R/plot_helpers.R
ac39c20ca7dd82972826fa730e385056 *R/plot_results.R
5a350ba8371beaece63ee38b0441b23d *R/plot_sim.R
0540fe4cfc1d28b23a73ea260aa670fc *R/plot_transition_mat.R
4dd68d23b1feb78032d96ffd1cd06a29 *R/pretrain.multivar.R
f43df4cf790f32b7bab6197611e58674 *R/pretrained_var_stage1.R
9e53f497ef9711c18200a97404931f26 *R/pretrained_var_stage1_glmnet.R
59de225cc29bdb5645d4a41815741d98 *R/pretrained_var_stage2.R
1e514a149023f41afb0d3ad4d59e326a *R/print_dynamics.R
f8f616861e143d7b0d258574ff1468a7 *R/print_edge_prevalence.R
83d5dfeef6f6820f9dfa4954c6a9503b *R/recover_intercepts.R
e21843e98a4e30cdafbc58d9d6fe4dfd *R/s3_methods.R
78399954319e94d0b6381f565a336cba *R/select_by_ebic.R
274ba82b6af940c4632e77be6a59c1d2 *R/setup_data.R
562a0d2ff216193483baec1f8c6b6308 *R/summary_multivar.R
551038e0b865997610b7dc4cd8914642 *R/var_forecast.R
cc576029fd381e5388d99813581c9220 *R/var_sim.R
291a2bc9ee98da73c5fbcdf7e3c52a01 *R/var_sim_growth.R
7e2644cf3f455899c02b5c2dfb210b55 *R/var_sim_tvp.R
846afd14b602bce3f84c2beb2ae81e6b *R/wlasso.R
d3af59659727d722de444a0064c34031 *README.md
96d06f81d7f552bc375fc1d3c0f5f5e4 *data/dat_multivar_sim.rda
eb979c890972538031d761605caba337 *man/adaptive_weights.Rd
f17eaef192d7f777e220c0f5743ed6bb *man/aggregate_common_redescending.Rd
dd278588068c3b55cace07590cad8157 *man/breakup_transition.Rd
3194dcad9a3947eeea4c608236311345 *man/build_column_spec.Rd
8ab4270ea093d77667fb8bf8546e0184 *man/build_cv_folds.Rd
79bdf72f4ea6889eb9e0cf820e5dff4d *man/build_matrix_spec.Rd
eb589b26d27fc50d4998b1ea786d67b7 *man/build_period_folds.Rd
1207d329340281942a04f15fbd591149 *man/build_row_spec.Rd
5a7a2731d3c8fe64d8e87952b38fa039 *man/build_row_spec_old.Rd
d75e268b8e50e85a239f41ece7ef9d78 *man/build_scenario_table.Rd
cfca86ad2b46d7bc72d4ae528906827e *man/build_theta_nodewise.Rd
723a84df574630fda2a42597cba389e5 *man/canonical.multivar-methods.Rd
8e7516e72dc29ec114ab0363589632fa *man/compute_common_effects.Rd
eeff6d628d0e3b8a01bdeafb2ce1e69b *man/compute_ebic.Rd
bb0589f546219b05706b9facd9587e02 *man/compute_subgroup_effects.Rd
de1a9be1840593c8e15d16083b611e6e *man/constructModel.Rd
af228051ea03e705af96286f316d883a *man/count_block_df.Rd
5db8ada1d9cc7faa80a55fb412201254 *man/cv.multivar-methods.Rd
be9e52977370e08921c7e1fcef1af6e4 *man/cv_blocked.Rd
42b2cbc6c0a12a3d56becc966f87b34a *man/cv_multivar.Rd
43eea0c5739c420889cdd78f4bdda13c *man/dat_multivar_sim.Rd
a9babe29b1c092a1198873c1b6039516 *man/debias_var1_single.Rd
7c8b8e76fa177c6cb4e05cf76060a67e *man/debias_var1_subjects.Rd
11a40fa833e1882d6e9fe713bb85da48 *man/decompose_effects.Rd
c31b86c4a552193084550a330c8b150f *man/decompose_tvp_effects.Rd
54bea340714cf51c10a0607553caf702 *man/dot-extract_matrices_from_fit.Rd
26419041f4cf7efc19b1c644ecbbe563 *man/dot-extract_matrices_from_sim.Rd
746f6346ec45a36869e1071997f350b8 *man/dot-plot_transition_heatmap.Rd
ef392be0d1e7375c5ff8467228084a79 *man/estimate_glmnet.Rd
068acba3dd6cd9b4bc69f398f04316cf *man/estimate_glmnet_alasso.Rd
a2e37236946dd3890daa7bdcb78060b7 *man/estimate_initial_coefs.Rd
1116fc308bfb91c5eb068c971be5d9c4 *man/estimate_maity_effects.Rd
138c62bc96d8aaa5ec5c2a273e027ab9 *man/estimate_ols.Rd
5f6e8bd41872b5d67d36f0399a9555b4 *man/estimate_raw_effects.Rd
95aec2bb7604548cc7f62f0dd15cfb3f *man/eval_multivar_performance.Rd
833b71c25fb5502dcfa618ed681b4798 *man/expand_range.Rd
9ce4cdbee22e2269bc9283bf009e3ef8 *man/extract_multivar_hyperparams.Rd
45231e1f96f36f95ab71e2d7fcfaa176 *man/get_common_cols.Rd
159ef47f0c8e284dc65f7b5f1f88e0bf *man/get_common_tvp_cols.Rd
6d6225457bca6c0165961ca7e4f6ce9e *man/get_dynamics_helpers.Rd
012964b8fbd085110c524125d76931fb *man/get_n_periods.Rd
0d7d00ef31ac9a835a125f41a0bc9082 *man/get_period_rows.Rd
9cb4bc1751bcf1f33dd728119958cdc9 *man/get_subgrp_cols.Rd
7c9e386f9da496be4bfb2659dc73073b *man/get_subgrp_cols_for_subject.Rd
8e7a169d72c7004128b73b32d545a0e2 *man/get_subject_rows.Rd
3234194d06636a08c3c488f8130b9e72 *man/get_unique_cols.Rd
1c722c49b5ddec8008e2a6786385733e *man/get_unique_tvp_cols.Rd
13b0ce8256554aebbb0bd1e116e2f772 *man/is_tvp.Rd
aafabc327d970d3562cd25db4cd65b66 *man/lambda_grid.Rd
dd2533fb28e9465070246161a5cdd164 *man/maity_debiasing.Rd
0dc548de34bad5266fe2ffaffafa42a1 *man/make_unit_weights.Rd
1bc0296cffcceef457c2db76cd6a3d94 *man/multivar-class.Rd
fa2594c4c60596f32c66c0be03d0d7d8 *man/multivar-imports.Rd
7c75971f9ec35c78ebd83ff505687011 *man/multivar-package.Rd
a873da33e152f07ae148e5c6e01af2d8 *man/multivar_fit_methods.Rd
9062d5dec75214799e4b7990013363a0 *man/multivar_sim.Rd
7810c820149e2054482801575c4c2d47 *man/multivar_sim_breaks.Rd
258928473276211fbe65347afd8fdf02 *man/multivar_sim_growth.Rd
33568fb5c5e453277e98b38806a5fbe1 *man/multivar_sim_subgroups.Rd
66d1c3eb62c90d875a85242e0a6d289f *man/multivar_sim_tvp.Rd
3781b46d54555eaf93ea57959ec1f4d4 *man/plot_cv_lambda_grid.Rd
4eaef31c2d7eab6495c0ed1322cca8ea *man/plot_results.Rd
c238b879678de78ec2c6063a26190d0c *man/plot_sim.Rd
e0d265784ff59ad233ee515f5ad8fd55 *man/plot_transition_mat.Rd
330ec3f7b3a76436acdd1011310663a2 *man/pretrained_var_stage1.Rd
1bb9461f8bb9a99ff5f3fcb6cb83d700 *man/pretrained_var_stage1_glmnet.Rd
e72130fbf8951d19500ca322da853a37 *man/print.matrix_spec.Rd
c9bf9d4827856dd03cade9def91181c5 *man/print_dynamics.Rd
ab898eeb8d4765e1f6c9a96ee40d80d3 *man/print_dynamics_tvp.Rd
727b7c7f15ef74e6cc23f333ad283b06 *man/print_edge_prevalence.Rd
bc70ee36523df5cdf77c1bff3eb7309d *man/recover_intercepts.Rd
297041b3e257ed2a847db5ecc6ce2fad *man/redescending_aggregate.Rd
492628733d953c894171e44fa82b356d *man/scale_weights_by_ratios.Rd
f9240ee4ebca0aeee5b04e73aff7e599 *man/select_by_ebic.Rd
7e00620181c7f18616972ffdaef5811e *man/show-methods.Rd
572427b3fff0be79b5efb7eadade81fe *man/soft_threshold_matrix.Rd
b06afc83e182b11ee4e0201aeb41684d *man/summary_multivar.Rd
565a0b05b6e8f74bb9b82cb72f19ba1b *man/validate_matrix_spec.Rd
36fb80689ec7913647f4e854ca5ef400 *man/var_sim_tvp.Rd
3441ea1d3d21f0264d84bfd547ca2183 *src/Makevars
3441ea1d3d21f0264d84bfd547ca2183 *src/Makevars.win
4db6ebe260c93a08ad97eb7ded655ae0 *src/RcppExports.cpp
006452ef9e7cba7ce94325ddf532d604 *src/multivar.cpp
e3e3007a53f319a8874805ddeefe46c2 *src/multivar2.cpp
86968f39cccb8169e7f9ffa9502cc478 *src/multivar_types.h
d2ef7b4712e403e685342d9b4a16364f *tests/testthat/plot_cooccurrence.png
41b7aa47dc40ff243310d9aa4e6639f4 *tests/testthat/plot_n_subtypes.png
1547f6ae8c735b6691bb8d014a0bf209 *tests/testthat/plot_prevalence_case.png
8f65413e57ab6881b74476102717c40a *tests/testthat/plot_records_per_case.png
ce866eb0619245bfb984686c958229cb *tests/testthat/plot_severity.png
f79321ed6c58133bfeb81283a248b8de *tests/testthat/plot_timeline.png
63bd47cb063cb5ae64957f9b3938684b *tests/testthat/rds/test00_common_effects.rds
43bc505b0dae2f0272ce1c82fc712d74 *tests/testthat/rds/test00_subgroup.rds
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ae9b40ebe3e7084798c21a72087795f6 *tests/testthat/rds/test00_tvp_k1_common_TRUE_min_common.rds
c8051e42b37aba768aae3c774a733acc *tests/testthat/rds/test00_tvp_k1_common_TRUE_min_tvp.rds
e3eb417a76b78a16d85037a802faaeca *tests/testthat/rds/test00_unique_effects.rds
d8291e589c6ea8bd077d12112b1669f3 *tests/testthat/test_ex00_multivar.R
f0738302da23a1dbd5fa1803013f5084 *tests/testthat/test_ex00_multivar_lambda.R
c4d5b280c0bcda37a40c3e18c669a8b4 *tests/testthat/test_ex00_subgroup.R
c5ea8c9d3aea11c824e778959ea27ad8 *tests/testthat/test_ex00_tvp_equivalence.R
d3fa3f2658e14b911bbcec69b2a26cdb *tests/testthat/test_ex00_tvp_k1.R
