6a515133d3a3e905e64f72cd0b4bb132 *DESCRIPTION
d16e7d167c409e8d1efa31d53c6b2738 *NAMESPACE
9383ea242a48768c032d26eacce96e60 *NEWS.md
97e208349e83eb9d1c553063a96639d1 *R/RcppExports.R
f86d57b73ae892bb02f5fda38f97fbaa *R/analysis_function.R
e42bb8dad4776a37c4af0f50bb0ecb44 *R/hhdynamics-package.R
82d2dd635858af522d4135a484ac5556 *R/hhdynamics_fit.R
7934af5ab47188d2048dd40c1685172e *R/load_data.R
fd6a2058ff424349091403c81a2d1b1c *R/plot.R
0c65e4e6c41dbaa62d7d8d110a71c291 *R/table.R
39362be30f00763a8b4ad1fa39675eb7 *R/utils-plot.R
1399b76dde63ca23a1cf6057f04be0f7 *R/validation.R
b071cd1524780a966b9a72f5b1961a94 *README.md
e0a4ebe856b38a08d70bb632d4f40d48 *build/vignette.rds
6071edd604dbeb75308cfbedc7790398 *cleanup
233bb3015280236be1f795a19ef5d2e6 *configure
d5b90d64ef2390a5443851e2c7c7b165 *data/SI.rda
6ce35551c73257c7d9a0b55300cced2a *data/inputdata.rda
6ec5c58eec8184c2102bbc54eeaedd45 *data/para.rda
1d539bbe84fc872d3fc9e774d725edf2 *inst/CITATION
7406b7eac0a8509fc595f1fc18f7a139 *inst/doc/hhdynamics-intro.R
3d09ba29c185f10e7fb416f3d073796e *inst/doc/hhdynamics-intro.Rmd
4454c8e22c79c91bdfacb65cd9d74a88 *inst/doc/hhdynamics-intro.html
5e270ae6034b339c2a13d20a5f7d2dec *inst/doc/hhdynamics-methodology.R
dc04b72daf72877dba2aeb764ea10347 *inst/doc/hhdynamics-methodology.Rmd
1c12a425eca79f65029bc559f44900b5 *inst/doc/hhdynamics-methodology.html
85dd26c29b3ae1c3c8d870213d48c9bb *man/SI.Rd
4809dde715edd6b22f87da2c1709115e *man/coef.hhdynamics_fit.Rd
754b562c3ec028116c54e0afa509ed1d *man/create_wide_data.Rd
a53677d6286c4f4c19820eb7b405b627 *man/figures/attack_rate.png
ea3ccd06de3c63674e98811e39204ed9 *man/figures/covariates.png
a8f265f261327a8ead05eb78b291a24d *man/figures/diagnostics.png
850a5d600ab7d3b176a6a78b13316b43 *man/figures/hhresult.png
25e733e6df488afbd1349e07ed2fc447 *man/figures/summary_output.txt
b26bccf56636eb5afe25fce94e5c96a1 *man/figures/transmission.png
331c78dd7c3f1aed138d82131405b780 *man/hhdynamics-package.Rd
4ff6e39f40917fd4381857c59decb7ce *man/household_dynamics.Rd
5c85f21f8d53ef565e5e4ab3dd5037f6 *man/inputdata.Rd
11743d9d9ef44778f2b21fd0e7a26dd2 *man/para.Rd
d727e1b21f7c31b6bff0ad413fe3f8ee *man/plot.hhdynamics_fit.Rd
dab95a819a90e99bf3fab863c335da04 *man/plot_attack_rate.Rd
d9caee9b4c2d077548d3d17a128a6b17 *man/plot_covariates.Rd
f9584bfedd99cce6b14d643c801ccfd6 *man/plot_diagnostics.Rd
e967f1dc53273a632798216a17d8ede6 *man/plot_household.Rd
42fa7c05bbc88548db4a843d06fb7fce *man/plot_transmission.Rd
319824204ac40141999c14b99dc7f7cb *man/print.hhdynamics_fit.Rd
f3cac292667ad80adf91d59962d928e9 *man/print.summary.hhdynamics_fit.Rd
8652869bf90d20ded2f4c1a02d46241d *man/run_MCMC.Rd
998bb852893b3f3026c20b02181b3e32 *man/simulate_data.Rd
2c8e67516fc600dcc1fdfc07ef18b0c2 *man/summary.hhdynamics_fit.Rd
37a0417d7762bf22d29a7c41c062e86e *man/table_attack_rates.Rd
e9c4aa68b65139d2b756e90e20ac8861 *man/table_covariates.Rd
61cca5a43d8ca4ce994b88147f3954cb *man/table_parameters.Rd
39f59ef9973c25c12b305054d6c47148 *src/Makevars.in
cfbb93e94b13725f117ba92193d8b652 *src/Makevars.win
82fd02a13963f4f2e8bd472edcd4a2eb *src/RcppExports.cpp
b070d7757230b0d79d9d19b04ca8040a *src/mcmc_function_hh.cpp
1ee3faa7a182f81740110c3f89cfee01 *tests/testthat.R
5d911d8c22d4379408df29cdac16f3e0 *tests/testthat/helper-setup.R
a23336c141fd8358f717f26749bbf23c *tests/testthat/test-estimate-si.R
5c81afddc6925cfd56c709e24a1f3837 *tests/testthat/test-fitting.R
4b6ac2699e7b73e5a0c0f5e01623b801 *tests/testthat/test-missing-covariates.R
81fe27d82b4996d7b0b3774d5fd3d13b *tests/testthat/test-onset-imputation.R
5e688d552c63ee379119febf3096ebac *tests/testthat/test-plot.R
563edc62288263f868e1945d1c9400d0 *tests/testthat/test-simulation.R
f246f39f12443125cb127f28fa236b40 *tests/testthat/test-table.R
93f16678b090c1ea584bcfcc45eb01f4 *tests/testthat/test-validation.R
3d09ba29c185f10e7fb416f3d073796e *vignettes/hhdynamics-intro.Rmd
dc04b72daf72877dba2aeb764ea10347 *vignettes/hhdynamics-methodology.Rmd
