ce1149b64c9f59bedcc29eeb1c648bd8 *DESCRIPTION
4c6537ed610047255e96fffde70201b4 *NAMESPACE
56625bd968ff9d561809293d798cd1e3 *NEWS.md
84f93940cdabbea42725ea287cc0fbf2 *R/bifrost_search-methods.R
a029c350102368a10fa50512f7857293 *R/plot_ic_acceptance_matrix.R
4ade13fd9a783cff096639910f5e4ac7 *R/plotting-utils.R
3ab093f5cf39741501b2cfb0605ef51e *R/searchOptimalConfiguration.R
02de0b68f1736b5f9c2d2d83089d9b4d *R/utils.R
06d1ac9118705a6ea46ffe4ca85ed9cd *README.md
1fbe9b12d5d08914297747c078ceb2ce *build/vignette.rds
b400fbaf79066bd4474fd7a4413a3d8b *inst/CITATION
90c575fee2fd380c10d42f24bd9d7fd5 *inst/WORDLIST
f7038babcce3774ea7478b0ae5d66e7f *inst/doc/jaw-shape-vignette.R
083857324770babf01f817a4ac35a9be *inst/doc/jaw-shape-vignette.Rmd
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4b71c2e3790a2379cf4c9d9ad967bf42 *inst/doc/quick-start-vignette.R
6b984429d2a9e9e0b2673011163bd7a8 *inst/doc/quick-start-vignette.Rmd
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b0466b9e94539ae00108dac93840b3e6 *inst/extdata/jaw-shape/jaws_coords.RDS
dbc446aabc8ddf09a7a992a7c64690cc *inst/extdata/jaw-shape/mrbayes_prune_tree.RDS
daf64ae4f0a3a6599db3e68a4b2da619 *man/figures/logo.png
60d6f6cad7d7e21f29aa8fb0c05c0b87 *man/generateViridisColorScale.Rd
01210a5cb93638a56125152624553219 *man/plot_ic_acceptance_matrix.Rd
0ec512944f9773471895b8fa833df262 *man/print.bifrost_search.Rd
27b8a690104b90ef13c902b64c3a9892 *man/searchOptimalConfiguration.Rd
0622a97a2aaa3c342f09636052c2d7f5 *tests/spelling.R
007bca48a424822ce9115754de927da1 *tests/testthat.R
98b23a25395f16b19bec77799baeef12 *tests/testthat/fixtures/simdata.RDS
5be97f0e11004dedfe7da26b1e26a1b4 *tests/testthat/test-addShiftToModel.R
075beaa34a47c53ccb0227056d6021c5 *tests/testthat/test-addShiftToModel_alt.R
e64add15d651083abb29e4709df540fd *tests/testthat/test-extractRegimeVCVs.R
a26164eeb3cd40f545baf658dab93f43 *tests/testthat/test-fitMvglsAndExtractBIC.formula.R
3b34d4d96d4dbf869f97bf5ffe9732c4 *tests/testthat/test-fitMvglsAndExtractGIC.formula.r
0f2d1cfdea17b818c601b3d154d095ef *tests/testthat/test-generatePaintedTrees.R
d9908c60fa7821207d0be53b57c5ba14 *tests/testthat/test-generateViridisColorScale.R
5e23896b86fc8acf405b262c9f8b24f0 *tests/testthat/test-getDescendants.R
ca0226c7e70a3d12300418e976f0d62e *tests/testthat/test-mvgls-functions.R
0c7a674e77aabd1dc509cc1324df8b94 *tests/testthat/test-paintSubTree_mod.R
2d4f40424bad5035b182ec412d535511 *tests/testthat/test-paintSubTree_removeShift.R
04ccac3929a3cf95578971278e1b0b45 *tests/testthat/test-plot_ic_acceptance_matrix.R
bf3e161a1e0f8515a1fc576e5af74c4f *tests/testthat/test-print-bifrost_search.R
2f25baa7c3d662f210a0621c855cdf6d *tests/testthat/test-removeShiftFromTree.R
93846727259fe082c94e1c5ce7f105f0 *tests/testthat/test-searchOptimalConfiguration.R
ebf5d96969a3a8fadc37744524ebac8b *tests/testthat/test-whichShifts.R
083857324770babf01f817a4ac35a9be *vignettes/jaw-shape-vignette.Rmd
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6b984429d2a9e9e0b2673011163bd7a8 *vignettes/quick-start-vignette.Rmd
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