62269ff5cfd9dc8ca4e4677cfd254582 *DESCRIPTION
63a6fa596902329b649a8c325b596228 *NAMESPACE
f12c56c4f696f8dde313d2d654c6955b *NEWS.md
61cb7e46c21932acae93abd8617e4521 *R/RcppExports.R
df9639c4d5081c1ffd6d30a51f3262b3 *R/rspr.R
424cf827c3071b21717b8bf3c3036658 *R/uspr.R
a6f0b714ce93cdadbd05f1cc6581cd68 *R/zzz.R
9d5d57306c989a862d29353812d857e7 *build/partial.rdb
ac0b56b62d656237cf01d5bf724f59dd *build/vignette.rds
cdb18e6063c04948ae2b8d184fa2b2da *inst/CITATION
3acbda7eb6beee3ed737196712770e49 *inst/WORDLIST
1f33bfc4d83cd40bdb2a225c9aac8be2 *inst/doc/TBRDist.R
94843e97fda575d67445ffe18842a806 *inst/doc/TBRDist.Rmd
0cd8dfc6b9449dfd7d99aa8947fbe391 *inst/doc/TBRDist.html
5ff9e3531bc3ad4a532dc0150d267bb4 *man/RSPRDist.Rd
8e8920d0444a5698afe5c6432c670c0e *man/TreeRearrangementDistances.Rd
b9fdd8407101df643f21c0dd9b14f6d9 *man/dot-CheckRooted.Rd
97a79c928edc8c140c06f388126e851b *man/dot-PrepareTrees.Rd
9b2030221330a774cfcf130686c56bee *man/internals.Rd
bc2acc42c1c2a3341c20299c05a6d403 *man/rspr_dist.Rd
39c9cdb8db6016a98923417548cd1e0f *src/RcppExports.cpp
2d5337cbe086b184c261cec20999a566 *src/rspr.cpp
98deb1a3f498e081328a389dd9b6184d *src/rspr/ClusterForest.h
04f072e0754a47917574e8edc0895462 *src/rspr/ClusterInstance.h
27ec44cd8ea5a8bb796412dad8309245 *src/rspr/Forest.h
622acd4b9fc064e0820676de0b8e887f *src/rspr/LCA.h
c9431ca14b86196109980b561f54acf9 *src/rspr/Makefile
4626757489d9696d85845844c1ca341c *src/rspr/Node.h
ea7b0d6eda03824371158859f41c5862 *src/rspr/R/rspR.r
ccc7d201760e801493c66b943f172e08 *src/rspr/R/rspR_examples.r
477a6a0293ee6b5cbf02031ceb035a05 *src/rspr/README.txt
9b7140ec6357eea6ec41091d69978152 *src/rspr/README_spr_supertrees.txt
f8eaaf6f19a0321472cc531aaf6b11d6 *src/rspr/SiblingPair.h
47c494899e839ec1418af4c6acc1ee44 *src/rspr/UndoMachine.h
ba1df4ae2c904a6ddb5b9098b8dcf1af *src/rspr/fill_matrix.cpp
919ef368894642ea0eb76a643acd5382 *src/rspr/gen_rooted_trees.pl
3c34afdc3adf82d2448f12715a255122 *src/rspr/gpl.txt
ec1acddfb6050ae9b5ca14bbf6b2b5ae *src/rspr/hybridization.h
41694154ff0dd79a8612d19ef1b1c0ae *src/rspr/lgt.h
e92a0eea9c197054e5beb742d478fb95 *src/rspr/multi_test.sh
2458ed0824830b161f97e66fed9c62f8 *src/rspr/node_glom.h
a91b44d89430ce5f02513971b1712dcf *src/rspr/rspr.cpp
9d4ff3c96b7ed37fcaa8bc33007caf55 *src/rspr/rspr.h
826cbcab6b89ff885db65abefbf5f05b *src/rspr/sparse_counts.h
ebd60caec69e616f0e71484ddd2de2e7 *src/rspr/spr_supertree.cpp
60e2c390228b09f1bceab0aa3a620985 *src/rspr/test_initial_super_trees/multi_supertree_7.1_test_00.txt
010419f81219a69520f5871cd74e419c *src/rspr/test_initial_super_trees/multi_supertree_7.1_test_00_1.txt
d470bf91138c46882c35672236e64cda *src/rspr/test_initial_super_trees/multi_supertree_7.1_test_00_2.txt
d91a91e4a4f1a393a08de51b3dd6ba09 *src/rspr/test_trees/big_test
46dda18b3e90cfa87410e38e590f37b3 *src/rspr/test_trees/big_test2
bfa5729e52f1190f89b41c32ad67f3bc *src/rspr/test_trees/bigtest_mult.txt
0aaaf92ac76149ff25aee2af5bbe04d3 *src/rspr/test_trees/cluster_1.txt
92e2c78fafc3245b8ee44c4f5b4a5bba *src/rspr/test_trees/cluster_10.txt
886e6be53d697177aaca483b139537f0 *src/rspr/test_trees/cluster_11.txt
ebd996c2ac1e9b5171ab487532f2e484 *src/rspr/test_trees/cluster_12.txt
6bb263cc1317c72518f2ebe9cd73fa7f *src/rspr/test_trees/cluster_13.txt
5750cb1993c5a2b5c1f04146d1d42ddb *src/rspr/test_trees/cluster_14.txt
2a86f51a4aa891c6555f1b576d0da068 *src/rspr/test_trees/cluster_15.txt
658130e05f1bf54f66ed74de05348579 *src/rspr/test_trees/cluster_16.txt
cad74d82b76fdbf12ee7c129b8a043bb *src/rspr/test_trees/cluster_17.txt
28a68e4415babbfac153f264e8dfc48f *src/rspr/test_trees/cluster_18.txt
ef9b1bcda6737d4e747dc343f38ea8e7 *src/rspr/test_trees/cluster_19.txt
efae055ef0149dd1fc7d9395d4c2d6e8 *src/rspr/test_trees/cluster_2.txt
345540635604229099ab0affaccaafb8 *src/rspr/test_trees/cluster_3.txt
fae2d0383436f4adc1e2c875e4c93f2d *src/rspr/test_trees/cluster_4.txt
67edb546713867703a9a0a3f2a13c5ed *src/rspr/test_trees/cluster_5.txt
4863d7aedbde255102fe89a7f12065a0 *src/rspr/test_trees/cluster_6.txt
af6be5aabe97aa3271ed49b48bc14f1e *src/rspr/test_trees/cluster_7.txt
bccd46f9a9629a3bddc5dec16c45d9d0 *src/rspr/test_trees/cluster_8.txt
33ab52f233e670b810eee5a8c9a6d593 *src/rspr/test_trees/cluster_9.txt
9800c4e3ddb8eb01fd3bd01d3785fdbb *src/rspr/test_trees/cluster_a.txt
33ab52f233e670b810eee5a8c9a6d593 *src/rspr/test_trees/cluster_b.txt
9800c4e3ddb8eb01fd3bd01d3785fdbb *src/rspr/test_trees/cluster_c.txt
d70b175231514d2b56bc937f821e2fdd *src/rspr/test_trees/cluster_d.txt
417826bc4a1cf038809ddfcdfae119fb *src/rspr/test_trees/cluster_e.txt
e8e1c13e2abd122ec139e85818c7d829 *src/rspr/test_trees/cluster_f.txt
f9e6696ad5d8a9c51c6a5147d634d4cb *src/rspr/test_trees/cluster_test
66bc59a034a44093b41ea380846e2f00 *src/rspr/test_trees/mult_big_test
1da4f0b65d2b65aa025fcf752498fe79 *src/rspr/test_trees/multi_cluster_test
4e995b29b0ef5f960c6d433b57a8a706 *src/rspr/test_trees/multi_cluster_test_b.txt
dcebd1faeecd2632886486704c69dddb *src/rspr/test_trees/multi_tree_7.1_test_00.txt
b9d2a6fce55ac6953121fd5f920ccc30 *src/rspr/test_trees/multi_tree_7.3_test_00.txt
41345d56fe9e9882d5e039aae3f54d54 *src/rspr/test_trees/multi_tree_7.4_test_00.txt
bbc75ba6feb4b896d880dc0b5b46ed07 *src/rspr/test_trees/multi_tree_8.2_test_00.txt
658e509f3c7e747d585a0fcf6789b0d2 *src/rspr/test_trees/multi_tree_8.4_test_00.txt
658e509f3c7e747d585a0fcf6789b0d2 *src/rspr/test_trees/multi_tree_8.4_test_01.txt
4ff14ba0887714e624ecfcf8eb492497 *src/rspr/test_trees/multi_tree_8.5_test_00.txt
ff59dcd193da56aac3b3d5a2d2d3c462 *src/rspr/test_trees/multi_tree_8.6_test_00.txt
5d505d73418a8a8ce81352cdf1bf38f0 *src/rspr/test_trees/multi_tree_8.7_test_00.txt
935ff1df39db0fb97fc51427111e3a41 *src/rspr/test_trees/multi_tree_8.7_test_01.txt
62242e670a62596e57eae70a9e9cb506 *src/rspr/test_trees/multi_tree_basic.txt
99393f000ff32a51e83acac694ea4c81 *src/rspr/test_trees/multi_tree_basic_2.txt
8567a39af56ec03dc58a4c3ea333c9cc *src/rspr/test_trees/multi_tree_basic_5.txt
279a458e6d17063da6007f0df3f674ae *src/rspr/test_trees/multi_tree_test_00.txt
4f57b589645d41ef4cb1fbafc34be8c0 *src/rspr/test_trees/rand_mult_.txt
368570759acb42a6955b1f026f2780dd *src/rspr/test_trees/rand_mult_10.txt
8e2f7a0929db075ea33bfb05d30b9898 *src/rspr/test_trees/rand_mult_15.txt
673855e8564a9cf7653757ca68373ed4 *src/rspr/test_trees/rand_mult_xx.txt
4e995b29b0ef5f960c6d433b57a8a706 *src/rspr/test_trees/rho_test.txt
2db33beea6aa56b1f06f32afeb7399da *src/rspr/test_trees/rho_test2.txt
3f7d3df812e472d718c546434f00fca9 *src/rspr/test_trees/show_moves_test.txt
cc3dc0b5ce7e57d776b7972c6ab8fb14 *src/rspr/test_trees/show_moves_test_1.txt
4708e616803a4735caca381aa1bbf077 *src/rspr/test_trees/show_moves_test_2.txt
cccd320c28f1305dc882534309a5629b *src/rspr/test_trees/single_cut_test_00.txt
991becb91027deef14eaa95747865c38 *src/rspr/test_trees/single_cut_test_01.txt
d80448c822f882228994787806bf687e *src/rspr/test_trees/trees2.txt
0877834697fecdfb3fe58cb751d2703a *src/rspr/test_trees/trees3.txt
97ca98701aae7d260cceb30528b9c535 *src/rspr/test_trees/trees4.txt
441583a2302a8ed8d181e908172cface *src/rspr/test_trees/trees5.txt
608ba7b57cb385557f277837805e8460 *src/rspr/test_trees/trees6.txt
96e9aab75c359627b4146caad7d6f38d *src/rspr/test_trees/trees7.txt
fe0f72b3a52a209a31db6f21682bdbbb *src/rspr/test_trees/trees_100_17.txt
8a5b3bbbf60255c5aa7cebb1e20b678b *src/rspr/test_trees/trees_100_17_a.txt
1240fd66a18fccc68aec18e35fcacec3 *src/rspr/test_trees/trees_100_17_mult.txt
9475861a751df7002d6dd41949f1d375 *src/rspr/test_trees/trees_100_24.txt
3a09059c44d153e56bc25d577faaa413 *src/rspr/test_trees/trees_100_24_a.txt
4091a8ff8ac23ecfdab7203cde090fcb *src/rspr/test_trees/trees_100_24_mult.txt
d0f648812be2f4d3c4bfc25e576a05fe *src/rspr/test_trees/trees_100_9.txt
3fb47902b9f1fecb447ab5b4e7d3d500 *src/rspr/test_trees/trees_100_9_a.txt
c3908aa05baed865a3ebe2cfe6925987 *src/rspr/test_trees/trees_a.txt
5f0e2d852a723b7f9e4c4af82e756ae0 *src/rspr/tests/pairwise
7fa0ac734a80390a8428f8a0ce2e66d3 *src/spr/canonize7.h
73aa8c7f057bafbcab5d6ac4f80e1e4e *src/spr/canonize8.h
d0fbc672835bce96575d723f59df03b0 *src/spr/canonize9.h
47c02dafa5f94314300705a09769501f *src/spr/lookup.h
8d285d6166ba0cdf5953d07f081c3893 *src/spr/lookup7.h
5de5bf718c30ad4c79a3953eadef57ff *src/spr/lookup8.h
a368cf337b8b5d49357d4d2fd62b0f68 *src/spr/lookup9.h
b8038f73362085749a49df56f4068b8e *src/spr/utree_splits.h
e1e7059f67f0918a772716a102e3779d *src/spr_lookup.cpp
a8928837fb12a2fb0645546d589fddce *src/uspr.cpp
0bfcb009788933cc9ca3ab8740e5fa04 *src/uspr/tbr.h
543188923f70b7fb58a68edf2646956a *src/uspr/tree_numbering.h
e9ba71060c726452e7422a7f09e8fa98 *src/uspr/uforest.h
00a0a7269ab0971f4b33fa1281b3ec8e *src/uspr/unode.h
fb30d71e30d7fa9a012b992ccec7cc05 *src/uspr/unode_arena.h
bd88d5f17990b4ae25477fde366b9133 *src/uspr/uspr.cpp
f965113ab3028ae20416e45b050ab2df *src/uspr/uspr.h
1de1f1ec7b7e687c03bc35360f2260f6 *src/uspr/uspr_neighbors.cpp
74a368b3c1adcef40aa7be4e219c2382 *src/uspr/uspr_neighbors.h
1bcaa506db833fd60b4e17847dc298cc *src/uspr/uspr_neighbors_numbered.h
0f51638e04218d8fd97706077ab22ebf *src/uspr/utree.h
718dbaefde81c13f46cb83c5edfdf3a6 *tests/testthat.R
389902513a881adbb83179c7c41cbd5a *tests/testthat/test-rspr.R
17c16aaf9a816db7973257da5d7fa9ae *tests/testthat/test-src.R
37fcd999bab8ef0c539be18d3efd62c5 *tests/testthat/test-uspr.R
94843e97fda575d67445ffe18842a806 *vignettes/TBRDist.Rmd
