72a5f55c8b4fe0b0aec62f54f5c4672c *DESCRIPTION
2a7e31d6c85f183b824d2b40e25ecfb8 *LICENSE
772027ee2caaa1a10f3d2595146763d2 *NAMESPACE
ef84337654a85c64529f378cd633812e *NEWS.md
ba75b9747c767cb465ef0e7ab13b7ea7 *R/HHBayes-package.R
09c5eb8c8444d632fed00c7ded61967a *R/analysis_functions.R
9a050430bb29e92b4231a8da846f0bfe *R/calculate_SAR.R
46eab1e961a7bf43bf19407caa51c188 *R/data_preparation.R
590b5865efa482e206988bad9b2258af *R/globals.R
14a6d7e7497b69d0137125ba1e5b3f37 *R/model_fitting.R
554d078d094b244454adba69260c296b *R/package-imports.R
91cf86e0f1b35660172f7bbbd0dd1f3e *R/plotting_functions.R
c5f8e5db56cb16e1b8ab0cee7b12d85e *R/simulator.R
7826ba86bee442d3f7e2b24f4ead360e *R/stanmodels.R
05605fc1e0f0fe2e9f2395255d3bc513 *R/vl_comput_fn.R
721b2b98d020fcd3804f5b254fe00c02 *README.md
1bf18d9c216b8d95033f0bd2fe2906b2 *build/partial.rdb
0289a4b1d2048dac2b9a5a3b4d2b71ab *build/vignette.rds
7e297a31e37e77c201a2bacff2f979eb *configure
5fdedca26c8830d7bb06aa1c4a634204 *configure.win
1d4a43f8a650defb96bc9739d781177c *inst/doc/HHBayes-tutorial.R
c338d779605f34d38f2705a67dc8c727 *inst/doc/HHBayes-tutorial.Rmd
066b997dc2529ed8e6b4982f4d19404b *inst/doc/HHBayes-tutorial.html
b9809ea884dc2d2eb8215132d4664673 *inst/extdata/manual.pdf
855c064dbf8deaff96c8dc8a87169109 *inst/include/stan_meta_header.hpp
163f67e567cdc228304397ac7b12daa1 *inst/stan/household_transmission.stan
afefe19aea052463b74413fe9eede117 *man/HHBayes-package.Rd
ded742209a9f590fb6c29e7f8569db14 *man/calculate_sar_quick.Rd
92f8150d746745f15d122180ae6bd320 *man/calculate_sar_robust.Rd
a43f90428857dce21375f2f5840d8d48 *man/figures/logo.png
b83da4e7e2159cb2746218d3558e6cff *man/fill_missing_viral_data.Rd
02fba16f205f244ba8d668e33db4d2d4 *man/fit_household_model.Rd
a3458f3bb14c23a36eb12ad4f3de3f13 *man/get_theoretical_ct.Rd
3ae7609fef56547d8a1310f9f60f4d73 *man/get_theoretical_vl.Rd
11a68fcbc3c97185448bc3f764d35a8f *man/plot_covariate_effects.Rd
cb28468ce409cfe926d8820ce15bdf18 *man/plot_epidemic_curve.Rd
98ed01fb6b7c7793c7fa6d270e47a64c *man/plot_household_timeline.Rd
b6679524849c15c63dbe8c28930f4311 *man/plot_posterior_distributions.Rd
09568e273d5b2f25d644a01dce948dc3 *man/prepare_stan_data.Rd
1caf0140bd63d63747e077b09a74dd1b *man/reconstruct_transmission_chains.Rd
52f3ba516d68a4eecf72f17c768fd961 *man/simulate_multiple_households_comm.Rd
b764b81bcb7f1ddd6089397eb43c0d51 *man/summarize_attack_rates.Rd
564c40d0e86bb1e58d039ff240e97b9f *src/Makevars
da918f252dfc8664f2cdfa27fda693c4 *src/RcppExports.cpp
5bede5e3fec7bdf54444bb02c6db39fe *src/stanExports_household_transmission.cc
022bd962055aaf7c94686c82113651d2 *src/stanExports_household_transmission.h
c338d779605f34d38f2705a67dc8c727 *vignettes/HHBayes-tutorial.Rmd
