Package: CrossExpression
Title: Cross-Expression Analysis of Spatial Transcriptomics Data
Version: 1.0.0
Authors@R: 
    c(
        person("Ameer", "Sarwar", email = "dogar.ameer@gmail.com", role = c("aut", "cre")),
        person("Sarah", "Choi", email = "sr.choi@mail.utoronto.ca", role = "ctb"),
        person("Leon", "French", email = "leon.french@utoronto.ca", role = "ctb"),
        person("Jesse", "Gillis", email = "jesse.gillis@utoronto.ca", role = "aut")
    )
Description: Analyzes spatial transcriptomic data using cells-by-genes and cell location matrices to find gene pairs that coordinate their expression between spatially adjacent cells. It enables quantitative analysis and graphical assessment of these cross-expression patterns. See Sarwar et al. (2025) <doi:10.1101/2024.09.17.613579> and <https://github.com/gillislab/CrossExpression/> for more details.
License: MIT + file LICENSE
Encoding: UTF-8
Imports: Rfast, RANN, Matrix, ggplot2, dplyr, stats, stringr
RoxygenNote: 7.3.2
NeedsCompilation: no
Packaged: 2025-07-25 23:42:31 UTC; AmeerSarwar
Author: Ameer Sarwar [aut, cre],
  Sarah Choi [ctb],
  Leon French [ctb],
  Jesse Gillis [aut]
Maintainer: Ameer Sarwar <dogar.ameer@gmail.com>
Depends: R (>= 3.5.0)
Repository: CRAN
Date/Publication: 2025-07-28 19:10:13 UTC
Built: R 4.5.3; ; 2026-05-16 19:18:34 UTC; windows
