Fitting Household Transmission Model to Estimate Household
Transmission Dynamics of Influenza
![[R logo]](../../../doc/html/Rlogo.svg)
![[Up]](../../../doc/html/left.jpg)
![[Top]](../../../doc/html/up.jpg)
Documentation for package ‘hhdynamics’ version 1.3.3
Help Pages
| coef.hhdynamics_fit | Extract model coefficients from hhdynamics_fit |
| create_wide_data | Create a wide format of household data |
| household_dynamics | Fit a household transmission model via MCMC |
| inputdata | Example of input data |
| para | Example of parameter vector for the main model |
| plot.hhdynamics_fit | Plot method for hhdynamics_fit objects |
| plot_attack_rate | Plot secondary attack rates |
| plot_covariates | Forest plot of covariate effects |
| plot_diagnostics | MCMC diagnostic plots |
| plot_household | Plot household infection timeline |
| plot_transmission | Plot transmission probability over time since onset |
| print.hhdynamics_fit | Print method for hhdynamics_fit |
| print.summary.hhdynamics_fit | Print method for summary.hhdynamics_fit |
| run_MCMC | Run the MCMC for the household transmission model |
| SI | Example of serial interval distribution of influenza |
| simulate_data | Simulate household transmission data |
| summary.hhdynamics_fit | Summary method for hhdynamics_fit |
| table_attack_rates | Table of secondary attack rates |
| table_covariates | Table of covariate effects (odds ratios) |
| table_parameters | Table of transmission parameter estimates |