Analysis of Event Data with Two Time Scales

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Documentation for package ‘TwoTimeScales’ version 1.2.1

• DESCRIPTION file
• User guides, package vignettes and other documentation
• Package NEWS
• Package README

Help Pages

covariates_plot	Plot of the covariates' effects
cumhaz2ts	Cumulative hazard over two time scales
cuminc2ts	Cumulative incidence surface over two time scales
exposures_events_1d	Bin data on one time scale
exposures_events_2d	Bin data on two time scales
exposures_events_Lexis	Bin data on the Lexis diagram
fit1ts	Fit a smooth hazard model with one time scale
fit2ts	Fit a smooth hazard model with two time scales
fitpgam	Fit a log-additive model over two time scales
fitvcm	Fit a Varying Coefficient Model (VCM) over two time scales
get_hazard_1d	Get estimated (log-)hazard values with 1 time scale
get_hazard_1d_LMM	Get estimated (log-)hazard values with 1 time scale
get_hazard_2d	Get estimated (log-)hazard surface with 2 time scales
get_hazard_2d_LMM	Get estimated (log-)hazard surface with 2 time scales
get_hr	Get the Hazard Ratios with their Standard Errors
haz2tsLMM_summary	Summary function for object of class 'haz2tsLMM'
haz2tsPGAM_summary	Summary function for object of class 'haz2tsPGAM'
haz2tsVCM_summary	Summary function for object of class 'haz2tsVCM'
haz2ts_summary	Summary function for object of class 'haz2ts'
imageplot_2ts	Image Plot of 2ts hazard
imageplot_SE	Image Plot of Standard Errors for the 2ts hazard
make_bins	Construct bins over one or more time axes
make_grid	Make a grid of points to evaluate B-splines
plot.haz1ts	Plot method for a haz1ts object.
plot.haz1tsLMM	Plot method for a haz1ts object.
plot.haz2ts	Plot method for a haz2ts object.
plot.haz2tsLMM	Plot method for a haz2tsLMM object.
plot.haz2tsPGAM	Plot method for a haz2tsPGAM object.
plot.haz2tsVCM	Plot method for a haz2tsVCM object.
plot_slices	Plot slices of the (log-) hazard
predict_cif2ts_pointwise	Point-wise prediction of cumulative incidence over 2 time scale
predict_comprisks2ts	Predict overall survival and cumulative incidence functions
predict_haz2ts	Prediction method for objects of class "haz2ts"
predict_haz2ts_pointwise	Point-wise prediction hazard 2 time scale
prepare_data	Prepare raw data by binning them in 1d or 2d
prepare_data_LMMsolver	Process data to fit model with LMMsolver
print.data2ts	Print method for a 'data2ts' object
reccolon2ts	Data from the chemotherapy for stace B/C colon cancer study
select_model2ts	Selects best model among a group of fitted models
surv2ts	Survival function with two time scales