%>%	pipe
apply_fdr_by_comparison	apply_fdr_by_comparison
assess_missing	assess_missing
build_formula	build_formula
build_pairwise_results	build_pairwise_results
build_replicate_matrix	build_replicate_matrix
build_results_tibble	build_results_tibble
calc_rank_product	calc_rank_product
calc_t_statistic	calc_t_statistic
check_zeros	check_zeros
classify_bf_evidence	classify_bf_evidence
combine_tech_reps	combine_tech_reps
compare	compare
compare.data.frame	compare.data.frame
compare.pepdiff_data	compare
compare_art	compare_art
compare_calls	compare_calls
compare_glm	compare_glm
compare_legacy	compare_legacy
compare_many	compare_many
compare_pairwise	compare_pairwise
compare_pairwise_rankprod	compare_pairwise_rankprod
compare_within_strata	compare_within_strata
compute_design_summary	compute_design_summary
compute_missingness	compute_missingness
estimate_result_clusters	estimate_result_clusters
extract_contrasts_art	extract_contrasts_art
extract_contrasts_glm	extract_contrasts_glm
extract_diagnostics	extract_diagnostics
extract_stored_residuals	extract_stored_residuals
fc_qqplot	fc_qqplot
fit_and_extract_art	fit_and_extract_art
fit_and_extract_glm	fit_and_extract_glm
fit_art	fit_art
fit_glm	fit_glm
fold_change_matrix	fold_change_matrix
get_all_residuals	get_all_residuals
get_bootstrap_percentile	get_bootstrap_percentile
get_comparison	get_comparison
get_kruskal_percentile	get_kruskal_percentile
get_peptide	get_peptide
get_percentile_lowest_observed_value_iterative	get_percentile_lowest_observed_value_iterative
get_rp_percentile	get_rp_percentile
get_sig_rows	get_sig_rows
get_wilcoxon_percentile	get_wilcoxon_percentile
has_sufficient_variation	has_sufficient_variation
import_data	import_data
is_useable	is_useable
jzs_bf_approx	jzs_bf_approx
kmeans_by_selected_cols	kmeans_by_selected_cols
list2mat	list2mat
log2_fc	log2_fc
long_results	long_results
matrix_data	matrix_data
mean_fold_change	mean_fold_change
metrics	metrics
min_peptide_values	min_peptide_values
missing_peptides_plot	missing_peptides_plot
new_pepdiff_data	new_pepdiff_data
new_pepdiff_results	new_pepdiff_results
norm_qqplot	norm_qqplot
plot.pepdiff_data	plot.pepdiff_data
plot.pepdiff_results	plot.pepdiff_results
plot_bf_distribution	plot_bf_distribution
plot_distributions_simple	plot_distributions_simple
plot_fc	plot_fc
plot_fc_distribution_new	plot_fc_distribution_new
plot_fit_diagnostics	plot_fit_diagnostics
plot_heatmap	plot_heatmap
plot_kmeans	plot_kmeans
plot_missingness_simple	plot_missingness_simple
plot_pca	plot_pca
plot_pca_simple	plot_pca_simple
plot_pvalue_histogram	plot_pvalue_histogram
plot_quant_distributions	plot_quant_distributions
plot_result	plot_result
plot_volcano_bf	plot_volcano_bf
plot_volcano_new	plot_volcano_new
print.pepdiff_data	print.pepdiff_data
print.pepdiff_results	print.pepdiff_results
print_diagnostic_summary	print_diagnostic_summary
p_value_hist	p_value_hist
read_pepdiff	read_pepdiff
replace_vals	replace_vals
run_models	run_models
select_columns_for_contrast	select_columns_for_contrast
significant	significant
subset.pepdiff_data	subset.pepdiff_data
summary.pepdiff_data	summary.pepdiff_data
summary.pepdiff_results	summary.pepdiff_results
test_bayes_t	test_bayes_t
test_bootstrap_t	test_bootstrap_t
test_rankprod	test_rankprod
test_wilcoxon	test_wilcoxon
times_measured	times_measured
times_measured_plot	times_measured_plot
validate_factors	validate_factors
validate_pepdiff_data	validate_pepdiff_data
validate_pepdiff_results	validate_pepdiff_results
validate_positive	validate_positive
volcano_plot	volcano_plot
