Singular Value Decomposition for Bioconductor Packages


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Documentation for package ‘BiocSingular’ version 1.6.0

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%*%-method The DeferredMatrix class
BiocSingular-options Global SVD options
BiocSingularParam-class BiocSingularParam classes
bsdeferred BiocSingularParam classes
bsfold BiocSingularParam classes
bsparam BiocSingularParam classes
colMeans-method The DeferredMatrix class
colSums-method The DeferredMatrix class
crossprod-method The DeferredMatrix class
DeferredMatrix The DeferredMatrix class
DeferredMatrix-class The DeferredMatrix class
DeferredMatrixSeed The DeferredMatrix class
DeferredMatrixSeed-class The DeferredMatrix class
DelayedArray-method The DeferredMatrix class
DelayedArray-method The LowRankMatrix class
dim-method The DeferredMatrix class
dim-method The LowRankMatrix class
dimnames-method The DeferredMatrix class
dimnames-method The LowRankMatrix class
dimnames<--method The DeferredMatrix class
dimnames<--method The LowRankMatrix class
ExactParam BiocSingularParam classes
ExactParam-class BiocSingularParam classes
extract_array-method The DeferredMatrix class
extract_array-method The LowRankMatrix class
FastAutoParam BiocSingularParam classes
FastAutoParam-class BiocSingularParam classes
IrlbaParam BiocSingularParam classes
IrlbaParam-class BiocSingularParam classes
LowRankMatrix The LowRankMatrix class
LowRankMatrix-class The LowRankMatrix class
LowRankMatrixSeed The LowRankMatrix class
LowRankMatrixSeed-class The LowRankMatrix class
RandomParam BiocSingularParam classes
RandomParam-class BiocSingularParam classes
ResidualMatrix The ResidualMatrix class
ResidualMatrixSeed The ResidualMatrix class
rowMeans-method The DeferredMatrix class
rowSums-method The DeferredMatrix class
runExactSVD Exact SVD
runIrlbaSVD Approximate SVD with 'irlba'
runPCA Principal components analysis
runPCA-method Principal components analysis
runRandomSVD Approximate SVD with 'rsvd'
runSVD Run SVD
runSVD-method Run SVD
show-method BiocSingularParam classes
show-method The DeferredMatrix class
show-method The LowRankMatrix class
t-method The DeferredMatrix class
t-method The LowRankMatrix class
tcrossprod-method The DeferredMatrix class
[-method The DeferredMatrix class
[-method The LowRankMatrix class