nandb: Number and Brightness Image Analysis

Calculation of molecular number and brightness from fluorescence microscopy image series. The software was published in a 2016 paper <doi:10.1093/bioinformatics/btx434>. The seminal paper for the technique is Digman et al. 2008 <doi:10.1529/biophysj.107.114645>. A review of the technique was published in 2017 <doi:10.1016/j.ymeth.2017.12.001>.

Version: 2.1.1
Depends: R (≥ 3.1)
Imports: assertthat, autothresholdr (≥ 1.3.11), BBmisc, checkmate (≥ 1.9.3), detrendr (≥ 0.6.12), dplyr, filesstrings (≥ 3.2), ggplot2, glue (≥ 1.3), ijtiff (≥ 2.2), magrittr (≥ 1.5), purrr, Rcpp (≥ 1.0.1), reshape2, rlang (≥ 0.3.3), stringr (≥ 1.4), utils, viridis, withr (≥ 2.1.0)
LinkingTo: Rcpp (≥ 1.0.1)
Suggests: abind, covr, gridExtra, knitr, magick, matrixStats (≥ 0.50), pacman, rmarkdown, spelling, testthat (≥ 2.1), tidyr
Published: 2025-05-06
DOI: 10.32614/CRAN.package.nandb
Author: Rory Nolan ORCID iD [aut, cre, cph], Luis Alvarez ORCID iD [ctb, cph], Sergi Padilla-Parra ORCID iD [ctb, ths, cph]
Maintainer: Rory Nolan <rorynoolan at gmail.com>
BugReports: https://github.com/rorynolan/nandb/issues
License: BSD_3_clause + file LICENSE
URL: https://rorynolan.github.io/nandb/, https://github.com/rorynolan/nandb
NeedsCompilation: yes
Language: en-US
Citation: nandb citation info
Materials: README, NEWS
CRAN checks: nandb results

Documentation:

Reference manual: nandb.html , nandb.pdf
Vignettes: Batch mode (source, R code)
Brightness timeseries (source, R code)
Calculating brightness with single images (source, R code)

Downloads:

Package source: nandb_2.1.1.tar.gz
Windows binaries: r-devel: nandb_2.1.1.zip, r-release: nandb_2.1.1.zip, r-oldrel: nandb_2.1.1.zip
macOS binaries: r-release (arm64): nandb_2.1.1.tgz, r-oldrel (arm64): nandb_2.1.1.tgz, r-release (x86_64): nandb_2.1.1.tgz, r-oldrel (x86_64): nandb_2.1.1.tgz
Old sources: nandb archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=nandb to link to this page.