Combination of results for meta-analysis using significance
and effect size only. P-values and fold-change are combined to obtain
a global significance on each metabolite. Produces a volcano plot
summarising the relevant results from meta-analysis. Vote-counting
reports for metabolites. And explore plot to detect discrepancies
between studies at a first glance. Methodology is described in the
Llambrich et al. (2021) <doi:10.1093/bioinformatics/btab591>.
| Version: |
0.3.0 |
| Depends: |
R (≥ 4.1) |
| Imports: |
dplyr (≥ 1.0.0), ggplot2 (≥ 3.3.0), ggrepel (≥ 0.9.0), kableExtra (≥ 1.3.0), knitr (≥ 1.45), magrittr (≥ 1.5), methods (≥ 3.6.0), readr (≥ 1.0.0), readxl (≥ 1.0.0), rmarkdown (≥ 2.25), stats (≥ 3.6.0), tibble (≥ 3.0.0), tidyr (≥ 1.1.0), tidyverse (≥ 1.3.0), webchem (≥ 1.1.0) |
| Suggests: |
markdown, metaboliteIDmapping, testthat, vdiffr |
| Published: |
2024-01-26 |
| DOI: |
10.32614/CRAN.package.amanida |
| Author: |
Maria Llambrich 
[aut, cre],
Eudald Correig [aut],
Raquel Cumeras [aut] |
| Maintainer: |
Maria Llambrich <maria.llambrich at urv.cat> |
| License: |
GPL-3 |
| URL: |
https://github.com/mariallr/amanida |
| NeedsCompilation: |
no |
| Materials: |
README |
| In views: |
MetaAnalysis |
| CRAN checks: |
amanida results [issues need fixing before 2026-02-25] |