Last updated on 2025-12-02 10:50:08 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.0 | 16.53 | 458.48 | 475.01 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.1.1 | 10.81 | 310.94 | 321.75 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.1.2 | 41.00 | 778.00 | 819.00 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.1.2 | 72.00 | 998.72 | 1070.72 | OK | |
| r-devel-windows-x86_64 | 0.1.2 | 22.00 | 565.00 | 587.00 | ERROR | |
| r-patched-linux-x86_64 | 0.1.0 | 18.85 | 434.65 | 453.50 | OK | |
| r-release-linux-x86_64 | 0.1.0 | 16.80 | 375.91 | 392.71 | ERROR | |
| r-release-macos-arm64 | 0.1.2 | 7.00 | 131.00 | 138.00 | OK | |
| r-release-macos-x86_64 | 0.1.2 | 19.00 | 632.00 | 651.00 | OK | |
| r-release-windows-x86_64 | 0.1.0 | 20.00 | 626.00 | 646.00 | OK | |
| r-oldrel-macos-arm64 | 0.1.2 | 8.00 | 130.00 | 138.00 | NOTE | |
| r-oldrel-macos-x86_64 | 0.1.2 | 19.00 | 585.00 | 604.00 | NOTE | |
| r-oldrel-windows-x86_64 | 0.1.2 | 17.00 | 430.00 | 447.00 | ERROR |
Version: 0.1.2
Check: whether package can be installed
Result: WARN
Found the following significant warnings:
Warning: namespace 'nlmixr2est' is not available and has been replaced
Warning: namespace 'rxode2' is not available and has been replaced
Flavors: r-devel-windows-x86_64, r-oldrel-windows-x86_64
Version: 0.1.2
Check: examples
Result: ERROR
Running examples in 'xpose.xtras-Ex.R' failed
The error most likely occurred in:
> ### Name: backfill_nlmixr2_props
> ### Title: Populate some properties from nlmixr2 fit
> ### Aliases: backfill_nlmixr2_props
>
> ### ** Examples
>
>
> xpdb_nlmixr2 %>%
+ set_prop(condn = "not implemented") %>%
+ get_prop("condn")
[1] "not implemented"
>
> xpdb_nlmixr2 %>%
+ set_prop(condn = "not implemented") %>%
+ backfill_nlmixr2_props() %>%
+ get_prop("condn")
Error in `backfill_nlmixr2_props()`:
! Incompatible nlmixr2/rxode2 fit object detected
ℹ This object was created with rxode2 < 5.0 and cannot be used with rxode2 >= 5.0
✖ The internal rxUi structure is incompatible between versions
! Please regenerate the fit object using current versions of nlmixr2est and rxode2
Backtrace:
▆
1. ├─... %>% get_prop("condn")
2. ├─xpose.xtras::get_prop(., "condn")
3. │ └─xpose::get_summary(xpdb)
4. │ └─xpose::check_xpdb(xpdb, check = "summary")
5. │ └─xpose::is.xpdb(xpdb)
6. └─xpose.xtras::backfill_nlmixr2_props(.)
7. └─rlang::abort(...)
Execution halted
Flavors: r-devel-windows-x86_64, r-oldrel-windows-x86_64
Version: 0.1.2
Check: tests
Result: ERROR
Running 'spelling.R' [0s]
Running 'testthat.R' [240s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(xpose.xtras)
ℹ xpose is not currently attached.
Attaching package: 'xpose.xtras'
The following object is masked from 'package:stats':
filter
>
> test_check("xpose.xtras")
Saving _problems/test-nlmixr2-10.R
[ FAIL 1 | WARN 0 | SKIP 10 | PASS 847 ]
══ Skipped tests (10) ══════════════════════════════════════════════════════════
• On CRAN (7): 'test-covariates.R:123:3', 'test-xplot_boxplot.R:157:3',
'test-xplot_pairs.R:44:3', 'test-xset_features.R:170:3',
'test-xset_features.R:170:3', 'test-xset_features.R:170:3',
'test-xset_features.R:170:3'
• requireNamespace("rxode2", quietly = TRUE) && "rxDerived" %in%
getNamespaceExports("rxode2") is TRUE (2): 'test-diag_constants.R:123:3',
'test-diag_constants.R:129:3'
• {qs} is not installed (1): 'test-nlmixr2.R:317:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-nlmixr2.R:8:3'): old fit detection works correctly ───────────
Expected `test_nlmixr2_is_old_fit(xpdb_nlmixr2)` to be FALSE.
Differences:
`actual`: TRUE
`expected`: FALSE
[ FAIL 1 | WARN 0 | SKIP 10 | PASS 847 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-windows-x86_64
Version: 0.1.0
Check: examples
Result: ERROR
Running examples in ‘xpose.xtras-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: backfill_nlmixr2_props
> ### Title: Populate some properties from nlmixr2 fit
> ### Aliases: backfill_nlmixr2_props
>
> ### ** Examples
>
>
> xpdb_nlmixr2 %>%
+ set_prop(condn = "not implemented") %>%
+ get_prop("condn")
[1] "not implemented"
>
> xpdb_nlmixr2 %>%
+ set_prop(condn = "not implemented") %>%
+ backfill_nlmixr2_props() %>%
+ get_prop("condn")
Error: package "qs" needed for this function to work
Execution halted
Flavor: r-release-linux-x86_64
Version: 0.1.0
Check: tests
Result: ERROR
Running ‘spelling.R’ [0s/0s]
Running ‘testthat.R’ [226s/254s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(xpose.xtras)
ℹ xpose is not currently attached.
Attaching package: 'xpose.xtras'
The following object is masked from 'package:stats':
filter
>
> test_check("xpose.xtras")
Error : package "qs" needed for this function to work
Saving _problems/test-nlmixr2-11.R
Error : package "qs" needed for this function to work
Saving _problems/test-nlmixr2-14.R
Error : package "qs" needed for this function to work
Saving _problems/test-nlmixr2-18.R
[ FAIL 3 | WARN 8 | SKIP 9 | PASS 799 ]
══ Skipped tests (9) ═══════════════════════════════════════════════════════════
• On CRAN (7): 'test-covariates.R:123:3', 'test-xplot_boxplot.R:157:3',
'test-xplot_pairs.R:44:3', 'test-xset_features.R:170:3',
'test-xset_features.R:170:3', 'test-xset_features.R:170:3',
'test-xset_features.R:170:3'
• requireNamespace("rxode2", quietly = TRUE) && "rxDerived" %in%
getNamespaceExports("rxode2") is TRUE (2): 'test-diag_constants.R:123:3',
'test-diag_constants.R:129:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-nlmixr2.R:9:3'): nlmixr2 is compatible ───────────────────────
Expected `nlmixr2_as_xtra(fit_example)` not to throw any errors.
Actually got a <rlang_error> with message:
No `nlmixr2` fit object found.
Caused by error in `seq_len()`:
! argument must be coercible to non-negative integer
── Failure ('test-nlmixr2.R:12:3'): nlmixr2 is compatible ──────────────────────
Expected `nlmixr2_as_xtra(fit_example, .skip_assoc = TRUE)` not to throw any errors.
Actually got a <rlang_error> with message:
No `nlmixr2` fit object found.
Caused by error in `seq_len()`:
! argument must be coercible to non-negative integer
── Error ('test-nlmixr2.R:15:3'): nlmixr2 is compatible ────────────────────────
Error in `backfill_nlmixr2_props(.)`: No `nlmixr2` fit object found.
Caused by error in `seq_len()`:
! argument must be coercible to non-negative integer
Backtrace:
▆
1. ├─testthat::expect_failure(...) at test-nlmixr2.R:15:3
2. │ └─testthat:::capture_success_failure(expr)
3. │ └─base::withCallingHandlers(...)
4. ├─testthat::expect_identical(...)
5. │ └─testthat::quasi_label(enquo(object), label)
6. │ └─rlang::eval_bare(expr, quo_get_env(quo))
7. ├─xpose.xtras::nlmixr2_as_xtra(fit_example)
8. │ ├─... %>% backfill_nlmixr2_props()
9. │ └─xpose.nlmixr2::xpose_data_nlmixr2(obj = obj, ...)
10. │ ├─obj$dataMergeInner
11. │ └─nlmixr2est:::`$.nlmixr2FitData`(obj, "dataMergeInner")
12. │ ├─nlmixr2est::nmObjGetData(.lst)
13. │ └─nlmixr2est:::nmObjGetData.dataMergeInner(.lst)
14. │ └─nlmixr2est:::.dataMergeStub(.obj, preferFit = FALSE)
15. ├─xpose.xtras::backfill_nlmixr2_props(.)
16. │ └─xpose.xtras:::assert_nlmixr2fit(xpdb)
17. │ ├─xpose.xtras:::xpa(...)
18. │ │ ├─rlang::try_fetch(...)
19. │ │ │ ├─base::tryCatch(...)
20. │ │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
21. │ │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
22. │ │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
23. │ │ │ └─base::withCallingHandlers(...)
24. │ │ └─rlang::exec(...)
25. │ └─xpose.xtras::test_nlmixr2_has_fit(xpdb)
26. │ └─xpose::check_xpdb(xpdb)
27. │ └─xpose::is.xpdb(xpdb)
28. ├─xpose.xtras:::mutate_files(...)
29. │ └─xpose::check_xpdb(xpdb)
30. │ └─xpose::is.xpdb(xpdb)
31. ├─xpose.xtras::set_prop(., file = mod_name)
32. │ └─xpose::get_summary(xpdb)
33. │ └─xpose::check_xpdb(xpdb, check = "summary")
34. │ └─xpose::is.xpdb(xpdb)
35. ├─xpose.xtras::as_xp_xtras(.)
36. │ └─xpose.xtras::as_xpdb_x(x)
37. │ └─base::structure(x, class = c("xp_xtras", "uneval"))
38. ├─xpose.xtras::attach_nlmixr2(., obj)
39. │ └─xpose::check_xpdb(xpdb)
40. │ └─xpose::is.xpdb(xpdb)
41. └─base::.handleSimpleError(...)
42. └─rlang (local) h(simpleError(msg, call))
43. └─handlers[[1L]](cnd)
44. └─rlang::abort(...)
[ FAIL 3 | WARN 8 | SKIP 9 | PASS 799 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-linux-x86_64
Version: 0.1.2
Check: installed package size
Result: NOTE
installed size is 9.5Mb
sub-directories of 1Mb or more:
data 3.4Mb
doc 3.1Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.1.2
Check: tests
Result: ERROR
Running 'spelling.R' [0s]
Running 'testthat.R' [231s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(xpose.xtras)
ℹ xpose is not currently attached.
Attaching package: 'xpose.xtras'
The following object is masked from 'package:stats':
filter
>
> test_check("xpose.xtras")
Saving _problems/test-nlmixr2-10.R
[ FAIL 1 | WARN 0 | SKIP 10 | PASS 847 ]
══ Skipped tests (10) ══════════════════════════════════════════════════════════
• On CRAN (7): 'test-covariates.R:123:3', 'test-xplot_boxplot.R:157:3',
'test-xplot_pairs.R:44:3', 'test-xset_features.R:170:3',
'test-xset_features.R:170:3', 'test-xset_features.R:170:3',
'test-xset_features.R:170:3'
• requireNamespace("rxode2", quietly = TRUE) && "rxDerived" %in%
getNamespaceExports("rxode2") is TRUE (2): 'test-diag_constants.R:123:3',
'test-diag_constants.R:129:3'
• {qs} is not installed (1): 'test-nlmixr2.R:317:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-nlmixr2.R:8:3'): old fit detection works correctly ───────────
Expected `test_nlmixr2_is_old_fit(xpdb_nlmixr2)` to be FALSE.
Differences:
`actual`: TRUE
`expected`: FALSE
[ FAIL 1 | WARN 0 | SKIP 10 | PASS 847 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-windows-x86_64