Last updated on 2026-01-24 10:48:50 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.4.13 | 18.70 | 258.69 | 277.39 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 0.4.13 | ERROR | ||||
| r-devel-linux-x86_64-fedora-clang | 0.4.13 | 33.00 | 400.88 | 433.88 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 0.4.13 | 36.00 | 455.61 | 491.61 | ERROR | |
| r-devel-windows-x86_64 | 0.4.13 | 21.00 | 271.00 | 292.00 | ERROR | |
| r-patched-linux-x86_64 | 0.4.13 | 20.46 | 323.28 | 343.74 | ERROR | |
| r-release-linux-x86_64 | 0.4.13 | 17.32 | 333.01 | 350.33 | ERROR | |
| r-release-macos-arm64 | 0.4.13 | OK | ||||
| r-release-macos-x86_64 | 0.4.13 | 12.00 | 225.00 | 237.00 | OK | |
| r-release-windows-x86_64 | 0.4.13 | 21.00 | 252.00 | 273.00 | ERROR | |
| r-oldrel-macos-arm64 | 0.4.13 | OK | ||||
| r-oldrel-macos-x86_64 | 0.4.13 | 12.00 | 290.00 | 302.00 | OK | |
| r-oldrel-windows-x86_64 | 0.4.13 | 33.00 | 337.00 | 370.00 | ERROR |
Version: 0.4.13
Check: tests
Result: ERROR
Running ‘testthat.R’ [77s/95s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
>
> if (requireNamespace("testthat")) {
+ library("testthat")
+ library("popEpi")
+ library("data.table")
+
+ using_r_devel <- grepl(pattern = "devel", x = R.version$status)
+ if (using_r_devel) {
+ ## memory leak problem in data.table 1.11.2 in R-devel (3.6.0 atm)
+ requireNamespace("data.table")
+ data.table::setDTthreads(threads = 1L)
+ }
+
+ testthat::test_check("popEpi")
+ }
Loading required namespace: testthat
Attaching package: 'data.table'
The following object is masked from 'package:base':
%notin%
Saving _problems/test_Surv-18.R
NOTE: entry.status has been set to "DM" for all.
first.bad.surv.int last.bad.surv.int surv.obs
<int> <int> <num>
1: 61 120 NaN
first.bad.surv.int last.bad.surv.int surv.obs
<int> <int> <num>
1: 61 120 NaN
Key: <agegr>
agegr first.bad.surv.int last.bad.surv.int surv.obs
<int> <int> <int> <num>
1: 3 61 120 NaN
Key: <agegr>
agegr first.bad.surv.int last.bad.surv.int surv.obs
<int> <int> <int> <num>
1: 3 61 120 NaN
[ FAIL 1 | WARN 0 | SKIP 41 | PASS 270 ]
══ Skipped tests (41) ══════════════════════════════════════════════════════════
• Unit tests skipped normally (41): 'test_aggre.R:162:3', 'test_aggre.R:199:3',
'test_expo.R:4:3', 'test_lexpand.R:5:3', 'test_lexpand.R:29:3',
'test_lexpand.R:59:3', 'test_lexpand.R:78:3', 'test_lexpand.R:99:3',
'test_lexpand.R:137:3', 'test_lexpand.R:213:3', 'test_lexpand.R:249:3',
'test_lexpand.R:342:3', 'test_relpois_mean_curve.R:4:3', 'test_sir.R:221:5',
'test_sir.R:257:3', 'test_splitLexisDT.R:4:3', 'test_splitMulti.R:9:3',
'test_splitting_breaks.R:5:3', 'test_splitting_breaks.R:39:3',
'test_splitting_randomly_on_fixed_data.R:9:3',
'test_splitting_randomly_on_random_data.R:9:3', 'test_survmean.R:6:3',
'test_survmean.R:76:3', 'test_survmean.R:117:3', 'test_survmean.R:166:3',
'test_survmean.R:265:3', 'test_survtab_adjusted.R:4:3',
'test_survtab_observed.R:67:3', 'test_survtab_relative.R:81:5',
'test_survtab_usage.R:6:3', 'test_survtab_usage.R:121:3',
'test_survtab_usage.R:198:3', 'test_survtab_usage.R:432:3',
'test_utils.R:4:3', 'test_utils.R:27:3', 'test_utils.R:138:3',
'test_utils.R:179:3', 'test_weighter.R:5:3', 'test_weighter.R:47:3',
'test_weighter.R:99:3', 'test_weighter.R:122:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_Surv.R:15:3'): survival::Surv and popEpi::Surv's formals are in harmony ──
Expected `popepi_formals` to be identical to `survival_formals`.
Differences:
Component "type": target, current do not match when deparsed
[ FAIL 1 | WARN 0 | SKIP 41 | PASS 270 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.4.13
Check: tests
Result: ERROR
Running ‘testthat.R’ [52s/58s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
>
> if (requireNamespace("testthat")) {
+ library("testthat")
+ library("popEpi")
+ library("data.table")
+
+ using_r_devel <- grepl(pattern = "devel", x = R.version$status)
+ if (using_r_devel) {
+ ## memory leak problem in data.table 1.11.2 in R-devel (3.6.0 atm)
+ requireNamespace("data.table")
+ data.table::setDTthreads(threads = 1L)
+ }
+
+ testthat::test_check("popEpi")
+ }
Loading required namespace: testthat
Attaching package: 'data.table'
The following object is masked from 'package:base':
%notin%
Saving _problems/test_Surv-18.R
NOTE: entry.status has been set to "DM" for all.
first.bad.surv.int last.bad.surv.int surv.obs
<int> <int> <num>
1: 61 120 NaN
first.bad.surv.int last.bad.surv.int surv.obs
<int> <int> <num>
1: 61 120 NaN
Key: <agegr>
agegr first.bad.surv.int last.bad.surv.int surv.obs
<int> <int> <int> <num>
1: 3 61 120 NaN
Key: <agegr>
agegr first.bad.surv.int last.bad.surv.int surv.obs
<int> <int> <int> <num>
1: 3 61 120 NaN
[ FAIL 1 | WARN 0 | SKIP 41 | PASS 270 ]
══ Skipped tests (41) ══════════════════════════════════════════════════════════
• Unit tests skipped normally (41): 'test_aggre.R:162:3', 'test_aggre.R:199:3',
'test_expo.R:4:3', 'test_lexpand.R:5:3', 'test_lexpand.R:29:3',
'test_lexpand.R:59:3', 'test_lexpand.R:78:3', 'test_lexpand.R:99:3',
'test_lexpand.R:137:3', 'test_lexpand.R:213:3', 'test_lexpand.R:249:3',
'test_lexpand.R:342:3', 'test_relpois_mean_curve.R:4:3', 'test_sir.R:221:5',
'test_sir.R:257:3', 'test_splitLexisDT.R:4:3', 'test_splitMulti.R:9:3',
'test_splitting_breaks.R:5:3', 'test_splitting_breaks.R:39:3',
'test_splitting_randomly_on_fixed_data.R:9:3',
'test_splitting_randomly_on_random_data.R:9:3', 'test_survmean.R:6:3',
'test_survmean.R:76:3', 'test_survmean.R:117:3', 'test_survmean.R:166:3',
'test_survmean.R:265:3', 'test_survtab_adjusted.R:4:3',
'test_survtab_observed.R:67:3', 'test_survtab_relative.R:81:5',
'test_survtab_usage.R:6:3', 'test_survtab_usage.R:121:3',
'test_survtab_usage.R:198:3', 'test_survtab_usage.R:432:3',
'test_utils.R:4:3', 'test_utils.R:27:3', 'test_utils.R:138:3',
'test_utils.R:179:3', 'test_weighter.R:5:3', 'test_weighter.R:47:3',
'test_weighter.R:99:3', 'test_weighter.R:122:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_Surv.R:15:3'): survival::Surv and popEpi::Surv's formals are in harmony ──
Expected `popepi_formals` to be identical to `survival_formals`.
Differences:
Component "type": target, current do not match when deparsed
[ FAIL 1 | WARN 0 | SKIP 41 | PASS 270 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.4.13
Check: tests
Result: ERROR
Running ‘testthat.R’ [123s/164s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
>
> if (requireNamespace("testthat")) {
+ library("testthat")
+ library("popEpi")
+ library("data.table")
+
+ using_r_devel <- grepl(pattern = "devel", x = R.version$status)
+ if (using_r_devel) {
+ ## memory leak problem in data.table 1.11.2 in R-devel (3.6.0 atm)
+ requireNamespace("data.table")
+ data.table::setDTthreads(threads = 1L)
+ }
+
+ testthat::test_check("popEpi")
+ }
Loading required namespace: testthat
Attaching package: 'data.table'
The following object is masked from 'package:base':
%notin%
Saving _problems/test_Surv-18.R
NOTE: entry.status has been set to "DM" for all.
first.bad.surv.int last.bad.surv.int surv.obs
<int> <int> <num>
1: 61 120 NaN
first.bad.surv.int last.bad.surv.int surv.obs
<int> <int> <num>
1: 61 120 NaN
Key: <agegr>
agegr first.bad.surv.int last.bad.surv.int surv.obs
<int> <int> <int> <num>
1: 3 61 120 NaN
Key: <agegr>
agegr first.bad.surv.int last.bad.surv.int surv.obs
<int> <int> <int> <num>
1: 3 61 120 NaN
[ FAIL 1 | WARN 0 | SKIP 41 | PASS 270 ]
══ Skipped tests (41) ══════════════════════════════════════════════════════════
• Unit tests skipped normally (41): 'test_aggre.R:162:3', 'test_aggre.R:199:3',
'test_expo.R:4:3', 'test_lexpand.R:5:3', 'test_lexpand.R:29:3',
'test_lexpand.R:59:3', 'test_lexpand.R:78:3', 'test_lexpand.R:99:3',
'test_lexpand.R:137:3', 'test_lexpand.R:213:3', 'test_lexpand.R:249:3',
'test_lexpand.R:342:3', 'test_relpois_mean_curve.R:4:3', 'test_sir.R:221:5',
'test_sir.R:257:3', 'test_splitLexisDT.R:4:3', 'test_splitMulti.R:9:3',
'test_splitting_breaks.R:5:3', 'test_splitting_breaks.R:39:3',
'test_splitting_randomly_on_fixed_data.R:9:3',
'test_splitting_randomly_on_random_data.R:9:3', 'test_survmean.R:6:3',
'test_survmean.R:76:3', 'test_survmean.R:117:3', 'test_survmean.R:166:3',
'test_survmean.R:265:3', 'test_survtab_adjusted.R:4:3',
'test_survtab_observed.R:67:3', 'test_survtab_relative.R:81:5',
'test_survtab_usage.R:6:3', 'test_survtab_usage.R:121:3',
'test_survtab_usage.R:198:3', 'test_survtab_usage.R:432:3',
'test_utils.R:4:3', 'test_utils.R:27:3', 'test_utils.R:138:3',
'test_utils.R:179:3', 'test_weighter.R:5:3', 'test_weighter.R:47:3',
'test_weighter.R:99:3', 'test_weighter.R:122:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_Surv.R:15:3'): survival::Surv and popEpi::Surv's formals are in harmony ──
Expected `popepi_formals` to be identical to `survival_formals`.
Differences:
Component "type": target, current do not match when deparsed
[ FAIL 1 | WARN 0 | SKIP 41 | PASS 270 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.4.13
Check: tests
Result: ERROR
Running ‘testthat.R’ [133s/492s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
>
> if (requireNamespace("testthat")) {
+ library("testthat")
+ library("popEpi")
+ library("data.table")
+
+ using_r_devel <- grepl(pattern = "devel", x = R.version$status)
+ if (using_r_devel) {
+ ## memory leak problem in data.table 1.11.2 in R-devel (3.6.0 atm)
+ requireNamespace("data.table")
+ data.table::setDTthreads(threads = 1L)
+ }
+
+ testthat::test_check("popEpi")
+ }
Loading required namespace: testthat
Attaching package: 'data.table'
The following object is masked from 'package:base':
%notin%
Saving _problems/test_Surv-18.R
NOTE: entry.status has been set to "DM" for all.
first.bad.surv.int last.bad.surv.int surv.obs
<int> <int> <num>
1: 61 120 NaN
first.bad.surv.int last.bad.surv.int surv.obs
<int> <int> <num>
1: 61 120 NaN
Key: <agegr>
agegr first.bad.surv.int last.bad.surv.int surv.obs
<int> <int> <int> <num>
1: 3 61 120 NaN
Key: <agegr>
agegr first.bad.surv.int last.bad.surv.int surv.obs
<int> <int> <int> <num>
1: 3 61 120 NaN
[ FAIL 1 | WARN 0 | SKIP 41 | PASS 270 ]
══ Skipped tests (41) ══════════════════════════════════════════════════════════
• Unit tests skipped normally (41): 'test_aggre.R:162:3', 'test_aggre.R:199:3',
'test_expo.R:4:3', 'test_lexpand.R:5:3', 'test_lexpand.R:29:3',
'test_lexpand.R:59:3', 'test_lexpand.R:78:3', 'test_lexpand.R:99:3',
'test_lexpand.R:137:3', 'test_lexpand.R:213:3', 'test_lexpand.R:249:3',
'test_lexpand.R:342:3', 'test_relpois_mean_curve.R:4:3', 'test_sir.R:221:5',
'test_sir.R:257:3', 'test_splitLexisDT.R:4:3', 'test_splitMulti.R:9:3',
'test_splitting_breaks.R:5:3', 'test_splitting_breaks.R:39:3',
'test_splitting_randomly_on_fixed_data.R:9:3',
'test_splitting_randomly_on_random_data.R:9:3', 'test_survmean.R:6:3',
'test_survmean.R:76:3', 'test_survmean.R:117:3', 'test_survmean.R:166:3',
'test_survmean.R:265:3', 'test_survtab_adjusted.R:4:3',
'test_survtab_observed.R:67:3', 'test_survtab_relative.R:81:5',
'test_survtab_usage.R:6:3', 'test_survtab_usage.R:121:3',
'test_survtab_usage.R:198:3', 'test_survtab_usage.R:432:3',
'test_utils.R:4:3', 'test_utils.R:27:3', 'test_utils.R:138:3',
'test_utils.R:179:3', 'test_weighter.R:5:3', 'test_weighter.R:47:3',
'test_weighter.R:99:3', 'test_weighter.R:122:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_Surv.R:15:3'): survival::Surv and popEpi::Surv's formals are in harmony ──
Expected `popepi_formals` to be identical to `survival_formals`.
Differences:
Component "type": target, current do not match when deparsed
[ FAIL 1 | WARN 0 | SKIP 41 | PASS 270 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 0.4.13
Check: tests
Result: ERROR
Running 'testthat.R' [83s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
>
> if (requireNamespace("testthat")) {
+ library("testthat")
+ library("popEpi")
+ library("data.table")
+
+ using_r_devel <- grepl(pattern = "devel", x = R.version$status)
+ if (using_r_devel) {
+ ## memory leak problem in data.table 1.11.2 in R-devel (3.6.0 atm)
+ requireNamespace("data.table")
+ data.table::setDTthreads(threads = 1L)
+ }
+
+ testthat::test_check("popEpi")
+ }
Loading required namespace: testthat
Attaching package: 'data.table'
The following object is masked from 'package:base':
%notin%
Saving _problems/test_Surv-18.R
NOTE: entry.status has been set to "DM" for all.
first.bad.surv.int last.bad.surv.int surv.obs
<int> <int> <num>
1: 61 120 NaN
first.bad.surv.int last.bad.surv.int surv.obs
<int> <int> <num>
1: 61 120 NaN
Key: <agegr>
agegr first.bad.surv.int last.bad.surv.int surv.obs
<int> <int> <int> <num>
1: 3 61 120 NaN
Key: <agegr>
agegr first.bad.surv.int last.bad.surv.int surv.obs
<int> <int> <int> <num>
1: 3 61 120 NaN
[ FAIL 1 | WARN 0 | SKIP 41 | PASS 270 ]
══ Skipped tests (41) ══════════════════════════════════════════════════════════
• Unit tests skipped normally (41): 'test_aggre.R:162:3', 'test_aggre.R:199:3',
'test_expo.R:4:3', 'test_lexpand.R:5:3', 'test_lexpand.R:29:3',
'test_lexpand.R:59:3', 'test_lexpand.R:78:3', 'test_lexpand.R:99:3',
'test_lexpand.R:137:3', 'test_lexpand.R:213:3', 'test_lexpand.R:249:3',
'test_lexpand.R:342:3', 'test_relpois_mean_curve.R:4:3', 'test_sir.R:221:5',
'test_sir.R:257:3', 'test_splitLexisDT.R:4:3', 'test_splitMulti.R:9:3',
'test_splitting_breaks.R:5:3', 'test_splitting_breaks.R:39:3',
'test_splitting_randomly_on_fixed_data.R:9:3',
'test_splitting_randomly_on_random_data.R:9:3', 'test_survmean.R:6:3',
'test_survmean.R:76:3', 'test_survmean.R:117:3', 'test_survmean.R:166:3',
'test_survmean.R:265:3', 'test_survtab_adjusted.R:4:3',
'test_survtab_observed.R:67:3', 'test_survtab_relative.R:81:5',
'test_survtab_usage.R:6:3', 'test_survtab_usage.R:121:3',
'test_survtab_usage.R:198:3', 'test_survtab_usage.R:432:3',
'test_utils.R:4:3', 'test_utils.R:27:3', 'test_utils.R:138:3',
'test_utils.R:179:3', 'test_weighter.R:5:3', 'test_weighter.R:47:3',
'test_weighter.R:99:3', 'test_weighter.R:122:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_Surv.R:15:3'): survival::Surv and popEpi::Surv's formals are in harmony ──
Expected `popepi_formals` to be identical to `survival_formals`.
Differences:
Component "type": target, current do not match when deparsed
[ FAIL 1 | WARN 0 | SKIP 41 | PASS 270 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-windows-x86_64
Version: 0.4.13
Check: tests
Result: ERROR
Running ‘testthat.R’ [125s/142s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
>
> if (requireNamespace("testthat")) {
+ library("testthat")
+ library("popEpi")
+ library("data.table")
+
+ using_r_devel <- grepl(pattern = "devel", x = R.version$status)
+ if (using_r_devel) {
+ ## memory leak problem in data.table 1.11.2 in R-devel (3.6.0 atm)
+ requireNamespace("data.table")
+ data.table::setDTthreads(threads = 1L)
+ }
+
+ testthat::test_check("popEpi")
+ }
Loading required namespace: testthat
Saving _problems/test_Surv-18.R
NOTE: entry.status has been set to "DM" for all.
first.bad.surv.int last.bad.surv.int surv.obs
<int> <int> <num>
1: 61 120 NaN
first.bad.surv.int last.bad.surv.int surv.obs
<int> <int> <num>
1: 61 120 NaN
Key: <agegr>
agegr first.bad.surv.int last.bad.surv.int surv.obs
<int> <int> <int> <num>
1: 3 61 120 NaN
Key: <agegr>
agegr first.bad.surv.int last.bad.surv.int surv.obs
<int> <int> <int> <num>
1: 3 61 120 NaN
[ FAIL 1 | WARN 0 | SKIP 41 | PASS 270 ]
══ Skipped tests (41) ══════════════════════════════════════════════════════════
• Unit tests skipped normally (41): 'test_aggre.R:162:3', 'test_aggre.R:199:3',
'test_expo.R:4:3', 'test_lexpand.R:5:3', 'test_lexpand.R:29:3',
'test_lexpand.R:59:3', 'test_lexpand.R:78:3', 'test_lexpand.R:99:3',
'test_lexpand.R:137:3', 'test_lexpand.R:213:3', 'test_lexpand.R:249:3',
'test_lexpand.R:342:3', 'test_relpois_mean_curve.R:4:3', 'test_sir.R:221:5',
'test_sir.R:257:3', 'test_splitLexisDT.R:4:3', 'test_splitMulti.R:9:3',
'test_splitting_breaks.R:5:3', 'test_splitting_breaks.R:39:3',
'test_splitting_randomly_on_fixed_data.R:9:3',
'test_splitting_randomly_on_random_data.R:9:3', 'test_survmean.R:6:3',
'test_survmean.R:76:3', 'test_survmean.R:117:3', 'test_survmean.R:166:3',
'test_survmean.R:265:3', 'test_survtab_adjusted.R:4:3',
'test_survtab_observed.R:67:3', 'test_survtab_relative.R:81:5',
'test_survtab_usage.R:6:3', 'test_survtab_usage.R:121:3',
'test_survtab_usage.R:198:3', 'test_survtab_usage.R:432:3',
'test_utils.R:4:3', 'test_utils.R:27:3', 'test_utils.R:138:3',
'test_utils.R:179:3', 'test_weighter.R:5:3', 'test_weighter.R:47:3',
'test_weighter.R:99:3', 'test_weighter.R:122:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_Surv.R:15:3'): survival::Surv and popEpi::Surv's formals are in harmony ──
Expected `popepi_formals` to be identical to `survival_formals`.
Differences:
Component "type": target, current do not match when deparsed
[ FAIL 1 | WARN 0 | SKIP 41 | PASS 270 ]
Error:
! Test failures.
Execution halted
Flavor: r-patched-linux-x86_64
Version: 0.4.13
Check: tests
Result: ERROR
Running ‘testthat.R’ [133s/143s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
>
> if (requireNamespace("testthat")) {
+ library("testthat")
+ library("popEpi")
+ library("data.table")
+
+ using_r_devel <- grepl(pattern = "devel", x = R.version$status)
+ if (using_r_devel) {
+ ## memory leak problem in data.table 1.11.2 in R-devel (3.6.0 atm)
+ requireNamespace("data.table")
+ data.table::setDTthreads(threads = 1L)
+ }
+
+ testthat::test_check("popEpi")
+ }
Loading required namespace: testthat
Saving _problems/test_Surv-18.R
NOTE: entry.status has been set to "DM" for all.
first.bad.surv.int last.bad.surv.int surv.obs
<int> <int> <num>
1: 61 120 NaN
first.bad.surv.int last.bad.surv.int surv.obs
<int> <int> <num>
1: 61 120 NaN
Key: <agegr>
agegr first.bad.surv.int last.bad.surv.int surv.obs
<int> <int> <int> <num>
1: 3 61 120 NaN
Key: <agegr>
agegr first.bad.surv.int last.bad.surv.int surv.obs
<int> <int> <int> <num>
1: 3 61 120 NaN
[ FAIL 1 | WARN 0 | SKIP 41 | PASS 270 ]
══ Skipped tests (41) ══════════════════════════════════════════════════════════
• Unit tests skipped normally (41): 'test_aggre.R:162:3', 'test_aggre.R:199:3',
'test_expo.R:4:3', 'test_lexpand.R:5:3', 'test_lexpand.R:29:3',
'test_lexpand.R:59:3', 'test_lexpand.R:78:3', 'test_lexpand.R:99:3',
'test_lexpand.R:137:3', 'test_lexpand.R:213:3', 'test_lexpand.R:249:3',
'test_lexpand.R:342:3', 'test_relpois_mean_curve.R:4:3', 'test_sir.R:221:5',
'test_sir.R:257:3', 'test_splitLexisDT.R:4:3', 'test_splitMulti.R:9:3',
'test_splitting_breaks.R:5:3', 'test_splitting_breaks.R:39:3',
'test_splitting_randomly_on_fixed_data.R:9:3',
'test_splitting_randomly_on_random_data.R:9:3', 'test_survmean.R:6:3',
'test_survmean.R:76:3', 'test_survmean.R:117:3', 'test_survmean.R:166:3',
'test_survmean.R:265:3', 'test_survtab_adjusted.R:4:3',
'test_survtab_observed.R:67:3', 'test_survtab_relative.R:81:5',
'test_survtab_usage.R:6:3', 'test_survtab_usage.R:121:3',
'test_survtab_usage.R:198:3', 'test_survtab_usage.R:432:3',
'test_utils.R:4:3', 'test_utils.R:27:3', 'test_utils.R:138:3',
'test_utils.R:179:3', 'test_weighter.R:5:3', 'test_weighter.R:47:3',
'test_weighter.R:99:3', 'test_weighter.R:122:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_Surv.R:15:3'): survival::Surv and popEpi::Surv's formals are in harmony ──
Expected `popepi_formals` to be identical to `survival_formals`.
Differences:
Component "type": target, current do not match when deparsed
[ FAIL 1 | WARN 0 | SKIP 41 | PASS 270 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-linux-x86_64
Version: 0.4.13
Check: tests
Result: ERROR
Running 'testthat.R' [77s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
>
> if (requireNamespace("testthat")) {
+ library("testthat")
+ library("popEpi")
+ library("data.table")
+
+ using_r_devel <- grepl(pattern = "devel", x = R.version$status)
+ if (using_r_devel) {
+ ## memory leak problem in data.table 1.11.2 in R-devel (3.6.0 atm)
+ requireNamespace("data.table")
+ data.table::setDTthreads(threads = 1L)
+ }
+
+ testthat::test_check("popEpi")
+ }
Loading required namespace: testthat
Saving _problems/test_Surv-18.R
NOTE: entry.status has been set to "DM" for all.
first.bad.surv.int last.bad.surv.int surv.obs
<int> <int> <num>
1: 61 120 NaN
first.bad.surv.int last.bad.surv.int surv.obs
<int> <int> <num>
1: 61 120 NaN
Key: <agegr>
agegr first.bad.surv.int last.bad.surv.int surv.obs
<int> <int> <int> <num>
1: 3 61 120 NaN
Key: <agegr>
agegr first.bad.surv.int last.bad.surv.int surv.obs
<int> <int> <int> <num>
1: 3 61 120 NaN
[ FAIL 1 | WARN 0 | SKIP 41 | PASS 270 ]
══ Skipped tests (41) ══════════════════════════════════════════════════════════
• Unit tests skipped normally (41): 'test_aggre.R:162:3', 'test_aggre.R:199:3',
'test_expo.R:4:3', 'test_lexpand.R:5:3', 'test_lexpand.R:29:3',
'test_lexpand.R:59:3', 'test_lexpand.R:78:3', 'test_lexpand.R:99:3',
'test_lexpand.R:137:3', 'test_lexpand.R:213:3', 'test_lexpand.R:249:3',
'test_lexpand.R:342:3', 'test_relpois_mean_curve.R:4:3', 'test_sir.R:221:5',
'test_sir.R:257:3', 'test_splitLexisDT.R:4:3', 'test_splitMulti.R:9:3',
'test_splitting_breaks.R:5:3', 'test_splitting_breaks.R:39:3',
'test_splitting_randomly_on_fixed_data.R:9:3',
'test_splitting_randomly_on_random_data.R:9:3', 'test_survmean.R:6:3',
'test_survmean.R:76:3', 'test_survmean.R:117:3', 'test_survmean.R:166:3',
'test_survmean.R:265:3', 'test_survtab_adjusted.R:4:3',
'test_survtab_observed.R:67:3', 'test_survtab_relative.R:81:5',
'test_survtab_usage.R:6:3', 'test_survtab_usage.R:121:3',
'test_survtab_usage.R:198:3', 'test_survtab_usage.R:432:3',
'test_utils.R:4:3', 'test_utils.R:27:3', 'test_utils.R:138:3',
'test_utils.R:179:3', 'test_weighter.R:5:3', 'test_weighter.R:47:3',
'test_weighter.R:99:3', 'test_weighter.R:122:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_Surv.R:15:3'): survival::Surv and popEpi::Surv's formals are in harmony ──
Expected `popepi_formals` to be identical to `survival_formals`.
Differences:
Component "type": target, current do not match when deparsed
[ FAIL 1 | WARN 0 | SKIP 41 | PASS 270 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-windows-x86_64
Version: 0.4.13
Check: tests
Result: ERROR
Running 'testthat.R' [103s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
>
> if (requireNamespace("testthat")) {
+ library("testthat")
+ library("popEpi")
+ library("data.table")
+
+ using_r_devel <- grepl(pattern = "devel", x = R.version$status)
+ if (using_r_devel) {
+ ## memory leak problem in data.table 1.11.2 in R-devel (3.6.0 atm)
+ requireNamespace("data.table")
+ data.table::setDTthreads(threads = 1L)
+ }
+
+ testthat::test_check("popEpi")
+ }
Loading required namespace: testthat
Saving _problems/test_Surv-18.R
NOTE: entry.status has been set to "DM" for all.
first.bad.surv.int last.bad.surv.int surv.obs
<int> <int> <num>
1: 61 120 NaN
first.bad.surv.int last.bad.surv.int surv.obs
<int> <int> <num>
1: 61 120 NaN
Key: <agegr>
agegr first.bad.surv.int last.bad.surv.int surv.obs
<int> <int> <int> <num>
1: 3 61 120 NaN
Key: <agegr>
agegr first.bad.surv.int last.bad.surv.int surv.obs
<int> <int> <int> <num>
1: 3 61 120 NaN
[ FAIL 1 | WARN 0 | SKIP 41 | PASS 270 ]
══ Skipped tests (41) ══════════════════════════════════════════════════════════
• Unit tests skipped normally (41): 'test_aggre.R:162:3', 'test_aggre.R:199:3',
'test_expo.R:4:3', 'test_lexpand.R:5:3', 'test_lexpand.R:29:3',
'test_lexpand.R:59:3', 'test_lexpand.R:78:3', 'test_lexpand.R:99:3',
'test_lexpand.R:137:3', 'test_lexpand.R:213:3', 'test_lexpand.R:249:3',
'test_lexpand.R:342:3', 'test_relpois_mean_curve.R:4:3', 'test_sir.R:221:5',
'test_sir.R:257:3', 'test_splitLexisDT.R:4:3', 'test_splitMulti.R:9:3',
'test_splitting_breaks.R:5:3', 'test_splitting_breaks.R:39:3',
'test_splitting_randomly_on_fixed_data.R:9:3',
'test_splitting_randomly_on_random_data.R:9:3', 'test_survmean.R:6:3',
'test_survmean.R:76:3', 'test_survmean.R:117:3', 'test_survmean.R:166:3',
'test_survmean.R:265:3', 'test_survtab_adjusted.R:4:3',
'test_survtab_observed.R:67:3', 'test_survtab_relative.R:81:5',
'test_survtab_usage.R:6:3', 'test_survtab_usage.R:121:3',
'test_survtab_usage.R:198:3', 'test_survtab_usage.R:432:3',
'test_utils.R:4:3', 'test_utils.R:27:3', 'test_utils.R:138:3',
'test_utils.R:179:3', 'test_weighter.R:5:3', 'test_weighter.R:47:3',
'test_weighter.R:99:3', 'test_weighter.R:122:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_Surv.R:15:3'): survival::Surv and popEpi::Surv's formals are in harmony ──
Expected `popepi_formals` to be identical to `survival_formals`.
Differences:
Component "type": target, current do not match when deparsed
[ FAIL 1 | WARN 0 | SKIP 41 | PASS 270 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-windows-x86_64