796d5e698c32bb4a3b3a7801abdde785 *DESCRIPTION
fb7a21389386e470944c3be0413faf88 *LICENSE
453d7cfe446b1b09660afe1073163cb7 *NAMESPACE
feef12ef6dc1ac6acc36142ad55c2fbb *NEWS.md
636760766794f9f339c29de8d4407fd0 *R/RcppExports.R
4c1e919452e6c9bb7157884bb473643f *R/gedi-package.R
1e6a2dd220e80932f5a3695b44e67a76 *R/gedi_class.R
fb075812a5e41e88e21c6ad8ea477dbe *R/gedi_dimred.R
a7b6a152db633f92bcdc17d96ab30a32 *R/gedi_dynamics.R
d4fd9ef9c132d8be7d99a03abe39fb97 *R/gedi_imputation.R
169ce36beab91e254204d1ca951db956 *R/gedi_pathway.R
6dc8779924775acb7f1a0d4e71303701 *R/gedi_plot_utils.R
da2adad169c084a41371cd9177779152 *R/gedi_plot_wrappers.R
e5649b53820ad72e83caf688fb4cb91f *R/gedi_plots.R
99c97c14e4809df1a32a8bf0fb1a3c99 *R/gedi_progress.R
4ba87b904a22ac9cbf5f8763564d10cd *R/gedi_projections.R
0fc4267e3f782fe7fdc6a7c4c470fc82 *R/h5_readers.R
770e8584b2dac6ecc42fda3f07963e22 *R/h5_writers.R
f8d5fb5d9a32b8c0818b39f4c4fd3e25 *R/imputation_accessors.R
e8f0b588288c10825853a0c7ecbdf69b *R/seurat_integration.R
95ebb0c4ce910f866f2ebb03e7dc0e66 *R/zzz.R
a4915ebf36926f743f425824cb80f687 *man/CreateGEDIObject.Rd
777c73be785237b76077379f79b0c1a7 *man/check_optional_dependencies.Rd
7df7f9ff3139d04a4f103a6602471ad2 *man/compute_color_limits.Rd
936ce6018d39809e3aa6b695c711aa93 *man/dot-get_color_vector.Rd
0baff575bd4c5551cd99402833b8b53e *man/dot-get_embedding.Rd
d07bedb6a9cc611cee4cbf0d364e7d21 *man/dot-plot_embedding_base.Rd
58e94ae686e7633624c23030497dab78 *man/figures/Logo.svg
173b1bca12610716770d1b811904ef32 *man/gedi2-package.Rd
6b1a4481da6b51c7ca09c81f1bc5585e *man/gedi_to_seurat.Rd
4b916c558392776f29e6b5f21b0d34b9 *man/install_optional_dependencies.Rd
bba0e102b784d4651e3f952dba22f383 *man/list_h5_structure.Rd
9650f53afd52d5f6160fe85be9d1aee8 *man/plot_convergence.Rd
e02208284df8e1965346d61ceee81798 *man/plot_dispersion.Rd
37807eb19412a6fc1a637dc25418b728 *man/plot_embedding.Rd
aef86c6e46ffe744da9fbbe85de8de8e *man/plot_feature_ratio.Rd
aa995525dccfe3eb364e66c5dbed7789 *man/plot_features.Rd
2765128d5134329f72390ef09b4a144a *man/plot_vector_field.Rd
2718469cc459cbabf5cec530cc09f075 *man/print.gedi_dynamics.Rd
6d2e9b584d2dbf3acdf4bb24d4d80cdf *man/print.gedi_dynamics_svd.Rd
c901c1ac8fdc54a6a8f51948f7a1cc6f *man/print.gedi_imputation.Rd
747678740ddd1267edd56e86d4bae991 *man/print.gedi_pathway_associations.Rd
d97dcbcad34cd4c4e344f0d5a6d8abd2 *man/read_h5.Rd
0815b165b1deecccb552f2590a694f80 *man/read_h5ad.Rd
4f675b498959c40b820f1725cf54afbe *man/scale_color_gedi_discrete.Rd
e4caa98424bafdd7c40279bb61242ff4 *man/scale_color_gedi_diverging.Rd
4981ac07e5124d58943ef4c79250389b *man/scale_fill_gedi_diverging.Rd
bb25b86341712c795169b30979965b52 *man/seurat_to_gedi.Rd
d63a4be4383ba3db597ab68c926f8c08 *man/theme_gedi.Rd
4f9694fa2968bd58f8fd2d5a13834a3a *man/write_h5ad.Rd
b04368a443292dd305df8fa09ad81f7c *src/Makevars
2c3bf9c00220b9c25e5f0c58694479c1 *src/Makevars.win
55af339c1159857900e68d6f08519cdf *src/RcppExports.cpp
a8bdba409d8ea076b3fbc467ea24dd57 *src/gedi_core.cpp
c634c0e43474afe06288cdadbfc69b24 *src/gedi_differential.cpp
193187e85c9e8fb7a3b5b108b2e4d7a3 *src/gedi_dimred.cpp
90a8246f434a0185bf479bc008cf0c64 *src/gedi_imputation.cpp
6ff6691d22c826b05163b77f08144498 *src/gedi_plots.cpp
e7e64fb027127fab5bc4306e73cb6a7f *src/gedi_projections.cpp
9d64d1bc295f970791f256f0a3f6db9b *src/matrix_oprations.cpp
a4d173b11a3e3566e4d32c7d661ac047 *tests/testthat.R
b2bedb6c7f427c2c1af4a2ed0452bdbf *tests/testthat/helper-synthetic-data.R
bf44ba94c70fc4cb3e5e7d4f8edf07c4 *tests/testthat/test-CreateGEDIObject.R
8e13c0e02549749666a7160238a29bd4 *tests/testthat/test-check-deps.R
67d9712d960fbecd7d607c003462229d *tests/testthat/test-diff-contrast-length.R
a8f9f19d9872fceca0132ed2014d5dde *tests/testthat/test-plot-convergence.R
7e82327c2f51e4fba0fde6a42bafcbda *tests/testthat/test-plot-dispersion.R
67e32e2a47abfe7f94af75b2058c146f *tests/testthat/test-plot-embedding.R
0debc921e53e5cfb154f1ce9506a0323 *tests/testthat/test-plot-features.R
0052ea699bf09026fa79cc01c4da85ba *tests/testthat/test-plot-utils.R
