4d801521f26f174f841644df6d7a90bd *DESCRIPTION
3f844d097a257470b1861afd31cd61fb *LICENSE
88a51cdf83208bfbcaae1de2c2657932 *NAMESPACE
5cc2ecd21b1c0174d766dc25a6f59a70 *NEWS.md
bb309d7cebfd1f6407e549caff4e7ed2 *R/Celltype_Annotation.R
6fa49c3ac85626e8ff78b841d986e782 *R/Celltype_Annotation_Combined.R
88a01776f8255c8a7394166f46a8cf1f *R/Celltype_Annotation_Features.R
af73f2b963033439735d53815757f699 *R/Celltype_Annotation_Heatmap.R
5f0f50e37166f0dd6565c2f76e03b72c *R/Celltype_Annotation_PerCell.R
df79d69b359899f34d85ebcfbb8d1384 *R/Celltype_Calculate.R
421a7580a194bcae729abfb8bd7c2dc3 *R/Celltype_Calculate_PerCell.R
a469184f07bf8a9e8a932f7e2425c938 *R/Celltype_Verification.R
70818b083878d4ea005185c2ab541c36 *R/Celltype_Verification_PerCell.R
c29689de0749719e0689b0e1cfa32899 *R/Celltype_annotation_Cellmarker2.R
971bdeef1d6cbaeac9b331c4b00e42ed *R/Celltype_annotation_Excel.R
2b9798de1c4da4b93011ce3b494e35e7 *R/Celltype_annotation_PanglaoDB.R
32d34f1377c207de47129678b16c9f12 *R/Celltype_annotation_Seurat.R
4a2bd3485d6027bb88b0e73580a99832 *R/Database_Cellmarker2.R
fbfe6dd83eca07337a41d34542ee4f85 *R/Database_Cellmarker2_raw.R
640c41d5fa88e10bcb618d9a842be952 *R/Database_Cellmarker2_table.R
530f08275d578f2755218e52451d4c14 *R/Database_Markers_list_PCTAM.R
ebef057f7b275790b4d8b43ba0d11192 *R/Database_Markers_list_PCTIT.R
a0f6a5fee94574560bec83b1a722cd8d *R/Database_Markers_list_TCellSI.R
4a1aeb445403a88a96f489f6fe598ed1 *R/Database_Markers_list_scIBD.R
e584390bde1401bdd8bd90bdd9d37dbf *R/Database_PanglaoDB.R
85d7005a77111abda43a43a9ff2a1a25 *R/Database_PanglaoDB_raw.R
421bec9dcaf9fd0f5077dd3ce1c878a3 *R/Database_PanglaoDB_table.R
3d94824691a8c57428a6154fa726dd95 *R/Database_ScType.R
b4748de3fd8023c7018590d2fed2309f *R/Expression_calculate.R
29d2f7cf18a7bef50343e08d25675e01 *R/Markers_filter_Cellmarker2.R
98118fab79689ff68869b78fdf87540c *R/Markers_filter_PanglaoDB.R
a9f9c858d1d3986410982bab28094daa *R/Markers_filter_ScType.R
cd263314d4730bc80c16053735f63093 *R/PerCell_Workflow_Example.R
d6f2a79548fcc8a0090c2cfd9ebeafa0 *R/Probability_calculate.R
b367d874291b6a635ac30d8eb61a5ca3 *R/Probability_parameter.R
50ce13dd7b246f7d1d515b7b164fbe46 *R/Read_excel_markers.R
07ac2041a7fb729511ee046032a38f9d *R/Read_seurat_markers.R
539f52ad024ad3997823eb0aeb83b00e *R/globals.R
d5c8b58f9868f2ffcd39e974dc6d4105 *R/onattach.R
b20f05aa45278cab4a5ce2d9a216a727 *R/plot_pheatmap.R
d07e2d57c147fa9a06143a222ba06790 *README.md
b54db8794555342c4feee5fe0b1b8f5b *build/partial.rdb
b8994e3ff532d7b66143a255ca7b8e8e *data/Cellmarker2.rda
a0c419857f8c97d4cadbb51e3292c0b5 *data/Cellmarker2_raw.rda
e68b7b464c83ab446e36d67877bc3bbe *data/Cellmarker2_table.rda
4866b1dd9bf983d008d839ec31fc7ea2 *data/Markers_list_PCTAM.rda
77602adb3067350893e5cf374fe939cd *data/Markers_list_PCTIT.rda
ae68fab70fba3f9335f5e8fd226e33d8 *data/Markers_list_TCellSI.rda
0ac0d0b1ad1125090c817b18166f8ac9 *data/Markers_list_scIBD.rda
941dd2389f9b832130222014c6a2fc17 *data/PanglaoDB.rda
583d86278649c7fd086494928a05301c *data/PanglaoDB_raw.rda
397659e2c819352ee9c4444f9e765b47 *data/PanglaoDB_table.rda
f3a888e600d7e4f6395bcbb5a598a628 *data/ScType.rda
64f02180c9debe8c6d15cbd22fa94ebf *data/ScType_raw.rda
c5f87067dff05872413d81ab0807e069 *data/ScType_table.rda
e34f36d2d85ed4d6092f4f62aa30b497 *man/Cellmarker2.Rd
1b0a9be0e8754d07876d264cad8674fb *man/Cellmarker2_raw.Rd
73c41be55d7c48d524199fa95c762896 *man/Cellmarker2_table.Rd
26ba4f8f81cf05789c2b7e0321f31ce4 *man/Celltype_Annotation.Rd
86796978484f4ec861a964286da0d182 *man/Celltype_Annotation_Combined.Rd
b73333080b8dc11669ec686d693d656c *man/Celltype_Annotation_Features.Rd
0997725e07d1a834dc4cbeb1d6b5541b *man/Celltype_Annotation_Heatmap.Rd
d5309a52f9094cd8bd1fad15d18ef1fa *man/Celltype_Annotation_PerCell.Rd
370f142485b95b2d97e368232533307e *man/Celltype_Calculate.Rd
5aba8043efac60cd3325245a0d7c8497 *man/Celltype_Calculate_PerCell.Rd
156ccf9cc65609a21f4555d35fb87675 *man/Celltype_Verification.Rd
7d32a9708d213483aeee3025a00b491f *man/Celltype_Verification_PerCell.Rd
50210d70d9096811dded8ff0618a969f *man/Celltype_annotation_Cellmarker2.Rd
76377be372f1be93b83b6c618db4f4ed *man/Celltype_annotation_Excel.Rd
3ea023139b55573e92c9f0b00325090c *man/Celltype_annotation_PanglaoDB.Rd
9fe3ae82bb729ec43a2568a154e8f175 *man/Celltype_annotation_Seurat.Rd
6d2755db6638494614a97e2a5989701e *man/Markers_filter_Cellmarker2.Rd
0a2b24e4fac2199e9470357d34d818c1 *man/Markers_filter_PanglaoDB.Rd
234a2a8e2a6e49dbc701ffcae52e4b8a *man/Markers_filter_ScType.Rd
41cbf145d102c003cbb1c1ecf7b6f0cf *man/Markers_list_PCTAM.Rd
5ebaa7e5afd049ea01cfb9466f68a4b6 *man/Markers_list_PCTIT.Rd
159a1b5f8785357ede036419c4b590eb *man/Markers_list_TCellSI.Rd
94212604acb5eb7874b11aa70cbee66e *man/Markers_list_scIBD.Rd
e75223d8b490a397c6035e45af20d53a *man/PanglaoDB.Rd
f9d3e280027fedd6b162147ce156630b *man/PanglaoDB_raw.Rd
5e510a5b75f846142c55d3062596dafb *man/PanglaoDB_table.Rd
c0c905be79f1c731fdcb28cbaab3b4d5 *man/Parameter_Calculate.Rd
781c7c17b3bc3423f0d8662ad18fc0d3 *man/Read_excel_markers.Rd
b5689de02a7984c320e6e29ac17611f7 *man/Read_seurat_markers.Rd
f94b887327321bda7d523645c1a88e8e *man/ScType.Rd
ba5a77984a6ac5e0f3603591c2c39805 *man/ScType_raw.Rd
0f02bad1de6432f9267d57cda4896593 *man/ScType_table.Rd
0ac254622dbcbf064a6c1b65755b4bcb *man/calculate_cluster_variability.Rd
92dc273e33a923477a84a1a0aea5dc3f *man/calculate_expression.Rd
cb75781c12022b96dcbe55c64935b7a7 *man/calculate_expression_skewness.Rd
06ee733d52d971039680a870fa373d9b *man/calculate_probability.Rd
6edba8828b907356b217e5574aa6e76b *man/compute_adaptive_parameters.Rd
ec830f4a503798ab139b51139ee75c1c *man/dot-apply_umap_smoothing.Rd
4e3204739e9ae323f87c5fb2f84630a5 *man/dot-compute_aucell_scores.Rd
d0656c312ed46fa8ac0f3015f31844e4 *man/dot-compute_weighted_scores.Rd
515f45d78d13c052b14e060ca29064ca *man/estimate_batch_effect.Rd
543b4615f2457faf25e9c9d03266c44a *man/extract_dataset_features.Rd
8643f3323bbdee97a24e70d965d12b52 *man/percell_workflow.Rd
23c14f9961f42bd2077738673f5624d3 *man/plot.pheatmap.Rd
56952a77a420047fa0997d92ac8a5e93 *tests/README.md
f9eac85bf1e555b82d85e1fca8aa08f3 *tests/testthat.R
36e8ee773cb31801b6d87c661b973ab0 *tests/testthat/Rplots.pdf
832d0429f88f1c23177b0a2fbb2b67be *tests/testthat/helper-test_data.R
2333b0e23c71c7dd9fc682e83a4903ab *tests/testthat/test-cluster-annotation.R
f3230eb5292612bbd9236815f76dc6c6 *tests/testthat/test-internal-functions.R
5505c621c9aa5a8a9a1e920a4ae5c5bc *tests/testthat/test-marker-functions.R
1c0ba43063a750c3e1a53bc18d9df2c7 *tests/testthat/test-percell-annotation.R
3ba8264e0d57b8f55b1a114407371cf1 *tests/testthat/test_percell_integration.R
