* using log directory 'd:/Rcompile/CRANpkg/local/4.4/gimap.Rcheck'
* using R version 4.4.3 (2025-02-28 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.3.0
    GNU Fortran (GCC) 13.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'gimap/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'gimap' version '1.1.1'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'gimap' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [2s] OK
* checking whether the package can be loaded with stated dependencies ... [2s] OK
* checking whether the package can be unloaded cleanly ... [2s] OK
* checking whether the namespace can be loaded with stated dependencies ... [2s] OK
* checking whether the namespace can be unloaded cleanly ... [3s] OK
* checking loading without being on the library search path ... [2s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [8s] OK
* checking Rd files ... [1s] OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [65s] ERROR
Running examples in 'gimap-Ex.R' failed
The error most likely occurred in:

> ### Name: setup_data
> ### Title: Making a new gimap dataset
> ### Aliases: setup_data
> 
> ### ** Examples
> 
> 
> counts <- get_example_data("count", data_dir = tempdir()) %>%
+   dplyr::select(c(
+     "Day00_RepA", "Day05_RepA", "Day22_RepA", "Day22_RepB",
+     "Day22_RepC"
+   )) %>%
+   as.matrix()

Downloading: 1.4 kB     
Downloading: 1.4 kB     
Downloading: 1.4 kB     
Downloading: 1.4 kB     Downloading: PP_pgPEN_HeLa_counts.txt

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Error in get_figshare(file_name = file_name, item = "28264271", output_dir = data_dir) : 
  Gateway Timeout (HTTP 504).
Calls: %>% ... <Anonymous> -> get_example_data -> get_figshare -> <Anonymous>
Execution halted
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [3s] OK
  Running 'testthat.R' [3s]
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [14s] ERROR
Error(s) in re-building vignettes:
--- re-building 'quick-start.Rmd' using rmarkdown
File output_timepoints/exp_v_obs_scatter.png not found in resource path
Error: processing vignette 'quick-start.Rmd' failed with diagnostics:
pandoc document conversion failed with error 99
--- failed re-building 'quick-start.Rmd'

--- re-building 'timepoint-example.Rmd' using rmarkdown
Warning in get_engine(options$engine) :
  Unknown language engine 'reval' (must be registered via knit_engines$set()).
File output_timepoints/exp_v_obs_scatter.png not found in resource path
Error: processing vignette 'timepoint-example.Rmd' failed with diagnostics:
pandoc document conversion failed with error 99
--- failed re-building 'timepoint-example.Rmd'

--- re-building 'treatment_example.Rmd' using rmarkdown
File output_treatment/exp_v_obs_scatter.png not found in resource path
Error: processing vignette 'treatment_example.Rmd' failed with diagnostics:
pandoc document conversion failed with error 99
--- failed re-building 'treatment_example.Rmd'

SUMMARY: processing the following files failed:
  'quick-start.Rmd' 'timepoint-example.Rmd' 'treatment_example.Rmd'

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... [18s] OK
* checking HTML version of manual ... [6s] OK
* DONE
Status: 2 ERRORs